Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.17■□□□□ 0.5
CBX4O00257 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.17■□□□□ 0.5
CBX4O00257 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.17■□□□□ 0.5
CBX4O00257 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CBX4O00257 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.17■□□□□ 0.5
CBX4O00257 MIR5100-201ENST00000579544 119 ntBASIC18.17■□□□□ 0.5
CBX4O00257 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CBX4O00257 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CBX4O00257 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.17■□□□□ 0.5
CBX4O00257 KRT18P55-202ENST00000578578 1546 ntBASIC18.17■□□□□ 0.5
CBX4O00257 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CBX4O00257 AC007613.1-201ENST00000572811 2597 ntBASIC18.17■□□□□ 0.5
CBX4O00257 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CBX4O00257 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.16■□□□□ 0.5
CBX4O00257 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CBX4O00257 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.16■□□□□ 0.5
CBX4O00257 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 AC007967.3-201ENST00000434308 558 ntBASIC18.16■□□□□ 0.5
CBX4O00257 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.16■□□□□ 0.5
CBX4O00257 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.16■□□□□ 0.5
CBX4O00257 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 AC104692.2-201ENST00000603054 253 ntBASIC18.16■□□□□ 0.5
CBX4O00257 AL591684.3-201ENST00000605187 298 ntBASIC18.16■□□□□ 0.5
CBX4O00257 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.16■□□□□ 0.5
CBX4O00257 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.16■□□□□ 0.5
CBX4O00257 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 AC097374.2-201ENST00000618617 1306 ntBASIC18.16■□□□□ 0.5
CBX4O00257 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 AC010460.3-201ENST00000511359 1579 ntBASIC18.16■□□□□ 0.5
CBX4O00257 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.16■□□□□ 0.5
CBX4O00257 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.16■□□□□ 0.5
CBX4O00257 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CBX4O00257 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.15■□□□□ 0.5
CBX4O00257 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CBX4O00257 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.15■□□□□ 0.5
CBX4O00257 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
CBX4O00257 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.15■□□□□ 0.5
CBX4O00257 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.15■□□□□ 0.5
CBX4O00257 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CBX4O00257 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.15■□□□□ 0.5
CBX4O00257 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.15■□□□□ 0.5
CBX4O00257 AC096633.1-201ENST00000422446 749 ntBASIC18.15■□□□□ 0.5
CBX4O00257 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.15■□□□□ 0.5
CBX4O00257 AC011467.2-201ENST00000598425 242 ntBASIC18.15■□□□□ 0.5
CBX4O00257 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.15■□□□□ 0.5
CBX4O00257 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.15■□□□□ 0.5
CBX4O00257 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
CBX4O00257 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CBX4O00257 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CBX4O00257 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CBX4O00257 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
CBX4O00257 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CBX4O00257 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.5
CBX4O00257 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.14■□□□□ 0.5
CBX4O00257 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.14■□□□□ 0.5
CBX4O00257 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CBX4O00257 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms