Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A6A6NMZ7 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A6A6NMZ7 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
COL6A6A6NMZ7 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A6A6NMZ7 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 SLC25A39P2-201ENST00000537614 270 ntBASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 CU639417.3-201ENST00000624240 1404 ntBASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 LINC01126-201ENST00000623515 1646 ntBASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 SNAI3-AS1-205ENST00000568633 2096 ntBASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 AC103564.2-201ENST00000432853 1299 ntBASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 GGTLC5P-201ENST00000617623 998 ntBASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A6A6NMZ7 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 PIN1P1-201ENST00000412108 996 ntBASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 AL020989.1-201ENST00000422979 469 ntBASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 SPDYE11-202ENST00000450699 704 ntBASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 SPDYE9P-201ENST00000570642 692 ntBASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 SPDYE10P-202ENST00000612005 668 ntBASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 SPDYE8P-202ENST00000612377 668 ntBASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 REXO1L3P-201ENST00000622202 1288 ntBASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A6A6NMZ7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 AC006116.8-202ENST00000587620 1550 ntBASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 SIRPAP1-201ENST00000448467 1770 ntBASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A6A6NMZ7 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms