Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 GOLGA2P4-201ENST00000441462 777 ntBASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 STOM-203ENST00000538954 1257 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 COG4-212ENST00000564653 590 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC85CA6NKD9 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 AL512408.1-201ENST00000569378 2000 ntBASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 GLI4-203ENST00000517468 963 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.46■□□□□ 0.71
CCDC85CA6NKD9 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 TTTY23B-201ENST00000442790 549 ntBASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC85CA6NKD9 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms