Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 MIR4751-201ENST00000578027 74 ntBASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 AC008667.4-201ENST00000607370 168 ntBASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 BX323043.1-201ENST00000641006 1765 ntBASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 ELL2P1-201ENST00000413990 1906 ntBASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHGA1Q9Y5H4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 ELK2BP-201ENST00000415014 1224 ntBASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 AC092865.6-201ENST00000642101 219 ntBASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 AC120498.9-201ENST00000339021 3867 ntBASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 NCF1C-201ENST00000438382 1427 ntBASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
PCDHGA1Q9Y5H4 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 AL499627.1-201ENST00000569373 2188 ntBASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 AC132938.6-201ENST00000623828 1655 ntBASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 AC108073.2-201ENST00000464002 357 ntBASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 AC092364.2-202ENST00000597012 1073 ntBASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
PCDHGA1Q9Y5H4 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHGA1Q9Y5H4 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
PCDHGA1Q9Y5H4 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHGA1Q9Y5H4 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHGA1Q9Y5H4 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHGA1Q9Y5H4 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHGA1Q9Y5H4 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHGA1Q9Y5H4 AC018445.3-201ENST00000624177 1945 ntBASIC17.02■□□□□ 0.31
PCDHGA1Q9Y5H4 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHGA1Q9Y5H4 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 AL353593.2-201ENST00000602529 1483 ntBASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 AL513190.1-201ENST00000621254 727 ntBASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms