Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 AC012317.2-201ENST00000623305 2251 ntBASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 AP000867.3-201ENST00000524675 377 ntBASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PCDHB3Q9Y5E6 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 AC246785.2-201ENST00000432512 513 ntBASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 LINC00265-3P-201ENST00000447588 903 ntBASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 TPSP2-201ENST00000561760 610 ntBASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 AC091304.2-201ENST00000564639 760 ntBASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHB3Q9Y5E6 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 MIR149-201ENST00000384879 89 ntBASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 KRT17P6-201ENST00000453795 1220 ntBASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms