Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 AL845331.1-201ENST00000424978 1190 ntBASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 AL358472.4-201ENST00000633140 710 ntBASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
AP4E1Q9UPM8 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 TSSC2-201ENST00000450217 709 ntBASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
AP4E1Q9UPM8 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
AP4E1Q9UPM8 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 AL353801.3-201ENST00000609898 542 ntBASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 LINC00304-203ENST00000565008 1864 ntBASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 REXO1L11P-201ENST00000620964 1927 ntBASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
AP4E1Q9UPM8 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 AC096633.1-201ENST00000422446 749 ntBASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 AC011840.4-201ENST00000578471 627 ntBASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 BX276092.7-203ENST00000637198 1536 ntBASIC18.44■□□□□ 0.54
AP4E1Q9UPM8 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
AP4E1Q9UPM8 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms