Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.75■□□□□ 0.11
MMP28Q9H239 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.75■□□□□ 0.11
MMP28Q9H239 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
MMP28Q9H239 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.75■□□□□ 0.11
MMP28Q9H239 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC15.75■□□□□ 0.11
MMP28Q9H239 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
MMP28Q9H239 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.75■□□□□ 0.11
MMP28Q9H239 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 AC132872.4-202ENST00000622924 2756 ntBASIC15.75■□□□□ 0.11
MMP28Q9H239 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC15.75■□□□□ 0.11
MMP28Q9H239 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC15.75■□□□□ 0.11
MMP28Q9H239 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC15.75■□□□□ 0.11
MMP28Q9H239 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 SNORA78-201ENST00000459373 127 ntBASIC15.75■□□□□ 0.11
MMP28Q9H239 AP002982.1-201ENST00000492365 877 ntBASIC15.75■□□□□ 0.11
MMP28Q9H239 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC15.75■□□□□ 0.11
MMP28Q9H239 RARRES2P10-201ENST00000564312 460 ntBASIC15.75■□□□□ 0.11
MMP28Q9H239 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC15.75■□□□□ 0.11
MMP28Q9H239 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
MMP28Q9H239 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 HLA-A-209ENST00000638375 975 ntBASIC15.75■□□□□ 0.11
MMP28Q9H239 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.75■□□□□ 0.11
MMP28Q9H239 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
MMP28Q9H239 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
MMP28Q9H239 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.75■□□□□ 0.11
MMP28Q9H239 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.75■□□□□ 0.11
MMP28Q9H239 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.75■□□□□ 0.11
MMP28Q9H239 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.75■□□□□ 0.11
MMP28Q9H239 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MMP28Q9H239 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
MMP28Q9H239 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
MMP28Q9H239 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
MMP28Q9H239 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC15.74■□□□□ 0.11
MMP28Q9H239 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
MMP28Q9H239 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
MMP28Q9H239 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
MMP28Q9H239 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 TK2-204ENST00000525974 1178 ntTSL 2 BASIC15.74■□□□□ 0.11
MMP28Q9H239 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC15.74■□□□□ 0.11
MMP28Q9H239 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
MMP28Q9H239 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 RCC2P6-201ENST00000526625 1557 ntBASIC15.74■□□□□ 0.11
MMP28Q9H239 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
MMP28Q9H239 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.74■□□□□ 0.11
MMP28Q9H239 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MMP28Q9H239 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.73■□□□□ 0.11
MMP28Q9H239 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC15.73■□□□□ 0.11
MMP28Q9H239 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.73■□□□□ 0.11
MMP28Q9H239 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.73■□□□□ 0.11
MMP28Q9H239 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
MMP28Q9H239 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC15.73■□□□□ 0.11
MMP28Q9H239 NIFKP9-201ENST00000419265 221 ntBASIC15.73■□□□□ 0.11
MMP28Q9H239 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC15.73■□□□□ 0.11
MMP28Q9H239 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC15.73■□□□□ 0.11
MMP28Q9H239 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC15.73■□□□□ 0.11
MMP28Q9H239 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC15.73■□□□□ 0.11
MMP28Q9H239 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC15.73■□□□□ 0.11
MMP28Q9H239 AL353708.3-201ENST00000610272 989 ntBASIC15.73■□□□□ 0.11
MMP28Q9H239 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
MMP28Q9H239 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms