Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 AC009949.1-201ENST00000623048 1830 ntBASIC18.34■□□□□ 0.53
RPRD1AQ96P16 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPRD1AQ96P16 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RPRD1AQ96P16 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.33■□□□□ 0.53
RPRD1AQ96P16 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.33■□□□□ 0.53
RPRD1AQ96P16 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RPRD1AQ96P16 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
RPRD1AQ96P16 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.33■□□□□ 0.53
RPRD1AQ96P16 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RPRD1AQ96P16 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
RPRD1AQ96P16 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RPRD1AQ96P16 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 MIR5100-201ENST00000579544 119 ntBASIC18.33■□□□□ 0.52
RPRD1AQ96P16 AC011467.2-201ENST00000598425 242 ntBASIC18.33■□□□□ 0.52
RPRD1AQ96P16 AL591684.3-201ENST00000605187 298 ntBASIC18.33■□□□□ 0.52
RPRD1AQ96P16 IFNL4P1-201ENST00000607083 540 ntBASIC18.33■□□□□ 0.52
RPRD1AQ96P16 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 AC010460.3-201ENST00000511359 1579 ntBASIC18.33■□□□□ 0.52
RPRD1AQ96P16 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.33■□□□□ 0.52
RPRD1AQ96P16 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.32■□□□□ 0.52
RPRD1AQ96P16 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 AL691432.3-201ENST00000621860 400 ntBASIC18.32■□□□□ 0.52
RPRD1AQ96P16 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RPRD1AQ96P16 AC007613.1-201ENST00000572811 2597 ntBASIC18.32■□□□□ 0.52
RPRD1AQ96P16 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 FAM220CP-201ENST00000395253 831 ntBASIC18.31■□□□□ 0.52
RPRD1AQ96P16 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 UNC93B7-201ENST00000509439 705 ntBASIC18.31■□□□□ 0.52
RPRD1AQ96P16 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.31■□□□□ 0.52
RPRD1AQ96P16 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
RPRD1AQ96P16 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms