Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SKA1Q96BD8 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SKA1Q96BD8 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.27■□□□□ 0.51
SKA1Q96BD8 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.27■□□□□ 0.51
SKA1Q96BD8 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SKA1Q96BD8 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SKA1Q96BD8 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SKA1Q96BD8 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SKA1Q96BD8 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 FDX1P1-201ENST00000449115 551 ntBASIC18.26■□□□□ 0.51
SKA1Q96BD8 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 FOSL1P1-201ENST00000511041 816 ntBASIC18.26■□□□□ 0.51
SKA1Q96BD8 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SKA1Q96BD8 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
SKA1Q96BD8 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 KRT18P31-201ENST00000506277 1292 ntBASIC18.25■□□□□ 0.51
SKA1Q96BD8 UNC93B7-201ENST00000509439 705 ntBASIC18.25■□□□□ 0.51
SKA1Q96BD8 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 AC074051.2-201ENST00000565115 352 ntBASIC18.25■□□□□ 0.51
SKA1Q96BD8 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SKA1Q96BD8 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SKA1Q96BD8 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.24■□□□□ 0.51
SKA1Q96BD8 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SKA1Q96BD8 AC106820.2-201ENST00000563775 3264 ntBASIC18.24■□□□□ 0.51
SKA1Q96BD8 AC108860.2-201ENST00000562760 2183 ntBASIC18.24■□□□□ 0.51
SKA1Q96BD8 AC124067.4-201ENST00000519691 2379 ntBASIC18.24■□□□□ 0.51
SKA1Q96BD8 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SKA1Q96BD8 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.24■□□□□ 0.51
SKA1Q96BD8 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SKA1Q96BD8 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SKA1Q96BD8 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SKA1Q96BD8 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.24■□□□□ 0.51
SKA1Q96BD8 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.24■□□□□ 0.51
SKA1Q96BD8 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SKA1Q96BD8 IGHGP-201ENST00000390555 1178 ntBASIC18.24■□□□□ 0.51
SKA1Q96BD8 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SKA1Q96BD8 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.24■□□□□ 0.51
SKA1Q96BD8 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SKA1Q96BD8 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms