Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
ATG4AQ8WYN0 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.46■□□□□ 0.54
ATG4AQ8WYN0 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 AC084018.2-201ENST00000613093 2607 ntBASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 RASA4DP-201ENST00000460726 1199 ntBASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 AC093827.2-201ENST00000512654 315 ntBASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 AC024563.2-201ENST00000603282 481 ntBASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ATG4AQ8WYN0 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 AL391807.1-203ENST00000604392 2365 ntBASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 AC087499.1-201ENST00000418141 1075 ntBASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 KRT18P65-201ENST00000439811 1286 ntBASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 AC034232.1-201ENST00000506026 1064 ntBASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 AC145285.6-201ENST00000604632 637 ntBASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 OR6D1P-202ENST00000641007 5290 ntBASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ATG4AQ8WYN0 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 SLC25A3P1-201ENST00000443844 931 ntBASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 AC010203.1-204ENST00000548782 407 ntBASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 AL136038.4-201ENST00000603606 1261 ntBASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.43■□□□□ 0.54
ATG4AQ8WYN0 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms