Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VRK3Q8IV63 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 HCG4P8-203ENST00000443049 980 ntBASIC17.38■□□□□ 0.37
VRK3Q8IV63 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.38■□□□□ 0.37
VRK3Q8IV63 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VRK3Q8IV63 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 BNIP3P18-201ENST00000593976 575 ntBASIC17.37■□□□□ 0.37
VRK3Q8IV63 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 LINC00304-203ENST00000565008 1864 ntBASIC17.37■□□□□ 0.37
VRK3Q8IV63 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.37■□□□□ 0.37
VRK3Q8IV63 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VRK3Q8IV63 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VRK3Q8IV63 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VRK3Q8IV63 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VRK3Q8IV63 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VRK3Q8IV63 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VRK3Q8IV63 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VRK3Q8IV63 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
VRK3Q8IV63 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VRK3Q8IV63 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 AC012615.1-201ENST00000565797 1299 ntBASIC17.36■□□□□ 0.37
VRK3Q8IV63 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VRK3Q8IV63 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VRK3Q8IV63 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VRK3Q8IV63 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.36■□□□□ 0.37
VRK3Q8IV63 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms