Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNFT1Q5M7Z0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
RNFT1Q5M7Z0 AL353593.2-201ENST00000602529 1483 ntBASIC15.97■□□□□ 0.15
RNFT1Q5M7Z0 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
RNFT1Q5M7Z0 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 KRT18P27-201ENST00000427733 1299 ntBASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 CYB561-217ENST00000582997 877 ntTSL 5 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 AC148477.5-201ENST00000625164 1645 ntBASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
RNFT1Q5M7Z0 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.96■□□□□ 0.14
RNFT1Q5M7Z0 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
RNFT1Q5M7Z0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 AC104581.1-202ENST00000635932 2618 ntBASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 AC073621.1-201ENST00000392730 636 ntBASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 MED15P5-201ENST00000423150 992 ntBASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 AC019129.2-201ENST00000609837 1235 ntBASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RNFT1Q5M7Z0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNFT1Q5M7Z0 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNFT1Q5M7Z0 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNFT1Q5M7Z0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNFT1Q5M7Z0 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
RNFT1Q5M7Z0 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNFT1Q5M7Z0 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNFT1Q5M7Z0 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RNFT1Q5M7Z0 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNFT1Q5M7Z0 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RNFT1Q5M7Z0 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC15.94■□□□□ 0.14
RNFT1Q5M7Z0 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms