Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.27■□□□□ 0.04
ABCA4P78363 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.27■□□□□ 0.04
ABCA4P78363 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.27■□□□□ 0.04
ABCA4P78363 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA4P78363 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA4P78363 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC15.27■□□□□ 0.04
ABCA4P78363 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC15.27■□□□□ 0.03
ABCA4P78363 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA4P78363 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA4P78363 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA4P78363 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA4P78363 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA4P78363 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
ABCA4P78363 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC15.27■□□□□ 0.03
ABCA4P78363 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA4P78363 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.27■□□□□ 0.03
ABCA4P78363 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA4P78363 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA4P78363 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA4P78363 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.27■□□□□ 0.03
ABCA4P78363 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC15.27■□□□□ 0.03
ABCA4P78363 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.27■□□□□ 0.03
ABCA4P78363 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.27■□□□□ 0.03
ABCA4P78363 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.27■□□□□ 0.03
ABCA4P78363 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.27■□□□□ 0.03
ABCA4P78363 AC073592.4-201ENST00000623827 446 ntBASIC15.27■□□□□ 0.03
ABCA4P78363 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA4P78363 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.27■□□□□ 0.03
ABCA4P78363 MED29-202ENST00000594368 1471 ntTSL 2 BASIC15.26■□□□□ 0.03
ABCA4P78363 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC15.26■□□□□ 0.03
ABCA4P78363 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
ABCA4P78363 KRT18P28-201ENST00000453838 1332 ntBASIC15.26■□□□□ 0.03
ABCA4P78363 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
ABCA4P78363 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.26■□□□□ 0.03
ABCA4P78363 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.26■□□□□ 0.03
ABCA4P78363 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.26■□□□□ 0.03
ABCA4P78363 AL022326.1-202ENST00000641533 845 ntBASIC15.26■□□□□ 0.03
ABCA4P78363 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC15.26■□□□□ 0.03
ABCA4P78363 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.26■□□□□ 0.03
ABCA4P78363 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
ABCA4P78363 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC15.26■□□□□ 0.03
ABCA4P78363 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
ABCA4P78363 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC15.26■□□□□ 0.03
ABCA4P78363 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC15.26■□□□□ 0.03
ABCA4P78363 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA4P78363 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
ABCA4P78363 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.26■□□□□ 0.03
ABCA4P78363 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.26■□□□□ 0.03
ABCA4P78363 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
ABCA4P78363 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.26■□□□□ 0.03
ABCA4P78363 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ABCA4P78363 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ABCA4P78363 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ABCA4P78363 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC15.25■□□□□ 0.03
ABCA4P78363 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ABCA4P78363 AP002414.3-201ENST00000589352 1468 ntBASIC15.25■□□□□ 0.03
ABCA4P78363 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ABCA4P78363 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ABCA4P78363 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
ABCA4P78363 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ABCA4P78363 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ABCA4P78363 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ABCA4P78363 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.25■□□□□ 0.03
ABCA4P78363 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.25■□□□□ 0.03
ABCA4P78363 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC15.25■□□□□ 0.03
ABCA4P78363 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC15.25■□□□□ 0.03
ABCA4P78363 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ABCA4P78363 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC15.25■□□□□ 0.03
ABCA4P78363 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
ABCA4P78363 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
ABCA4P78363 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
ABCA4P78363 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ABCA4P78363 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.24■□□□□ 0.03
ABCA4P78363 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.24■□□□□ 0.03
ABCA4P78363 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC15.24■□□□□ 0.03
ABCA4P78363 AC239800.4-201ENST00000603712 296 ntBASIC15.24■□□□□ 0.03
ABCA4P78363 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.24■□□□□ 0.03
ABCA4P78363 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ABCA4P78363 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
ABCA4P78363 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms