Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
LIM2P55344 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.89■□□□□ 0.29
LIM2P55344 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIM2P55344 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.89■□□□□ 0.29
LIM2P55344 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.89■□□□□ 0.29
LIM2P55344 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.89■□□□□ 0.29
LIM2P55344 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.89■□□□□ 0.29
LIM2P55344 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIM2P55344 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.89■□□□□ 0.29
LIM2P55344 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIM2P55344 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.89■□□□□ 0.29
LIM2P55344 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
LIM2P55344 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.89■□□□□ 0.29
LIM2P55344 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.89■□□□□ 0.29
LIM2P55344 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.89■□□□□ 0.29
LIM2P55344 AC116407.2-201ENST00000613639 860 ntBASIC16.89■□□□□ 0.29
LIM2P55344 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIM2P55344 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIM2P55344 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.89■□□□□ 0.29
LIM2P55344 AC012317.2-201ENST00000623305 2251 ntBASIC16.89■□□□□ 0.29
LIM2P55344 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LIM2P55344 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
LIM2P55344 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
LIM2P55344 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.88■□□□□ 0.29
LIM2P55344 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LIM2P55344 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIM2P55344 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.88■□□□□ 0.29
LIM2P55344 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LIM2P55344 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 AC246785.2-201ENST00000432512 513 ntBASIC16.88■□□□□ 0.29
LIM2P55344 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.88■□□□□ 0.29
LIM2P55344 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
LIM2P55344 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.88■□□□□ 0.29
LIM2P55344 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.88■□□□□ 0.29
LIM2P55344 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.88■□□□□ 0.29
LIM2P55344 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 AC092119.3-201ENST00000612618 583 ntBASIC16.88■□□□□ 0.29
LIM2P55344 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.88■□□□□ 0.29
LIM2P55344 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LIM2P55344 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LIM2P55344 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.88■□□□□ 0.29
LIM2P55344 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LIM2P55344 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.88■□□□□ 0.29
LIM2P55344 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
LIM2P55344 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIM2P55344 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIM2P55344 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.87■□□□□ 0.29
LIM2P55344 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.87■□□□□ 0.29
LIM2P55344 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
LIM2P55344 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
LIM2P55344 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.87■□□□□ 0.29
LIM2P55344 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.87■□□□□ 0.29
LIM2P55344 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
LIM2P55344 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 TOB2P1-201ENST00000469761 992 ntBASIC16.87■□□□□ 0.29
LIM2P55344 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.87■□□□□ 0.29
LIM2P55344 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.87■□□□□ 0.29
LIM2P55344 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.87■□□□□ 0.29
LIM2P55344 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.87■□□□□ 0.29
LIM2P55344 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
LIM2P55344 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.87■□□□□ 0.29
LIM2P55344 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
LIM2P55344 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
LIM2P55344 AC233702.3-201ENST00000578656 1387 ntBASIC16.87■□□□□ 0.29
LIM2P55344 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms