Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
HMGCS2P54868 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
HMGCS2P54868 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.44■□□□□ 0.86
HMGCS2P54868 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC20.44■□□□□ 0.86
HMGCS2P54868 YBX1P5-201ENST00000509441 847 ntBASIC20.44■□□□□ 0.86
HMGCS2P54868 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.44■□□□□ 0.86
HMGCS2P54868 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.44■□□□□ 0.86
HMGCS2P54868 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC20.44■□□□□ 0.86
HMGCS2P54868 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
HMGCS2P54868 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.44■□□□□ 0.86
HMGCS2P54868 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.44■□□□□ 0.86
HMGCS2P54868 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
HMGCS2P54868 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.44■□□□□ 0.86
HMGCS2P54868 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
HMGCS2P54868 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.44■□□□□ 0.86
HMGCS2P54868 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.44■□□□□ 0.86
HMGCS2P54868 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
HMGCS2P54868 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGCS2P54868 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGCS2P54868 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGCS2P54868 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGCS2P54868 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGCS2P54868 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGCS2P54868 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGCS2P54868 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGCS2P54868 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGCS2P54868 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
HMGCS2P54868 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGCS2P54868 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC20.43■□□□□ 0.86
HMGCS2P54868 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
HMGCS2P54868 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC20.43■□□□□ 0.86
HMGCS2P54868 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGCS2P54868 CFL1-202ENST00000524553 860 ntTSL 2 BASIC20.43■□□□□ 0.86
HMGCS2P54868 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGCS2P54868 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.43■□□□□ 0.86
HMGCS2P54868 AC093677.2-201ENST00000600169 1863 ntBASIC20.43■□□□□ 0.86
HMGCS2P54868 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.43■□□□□ 0.86
HMGCS2P54868 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGCS2P54868 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
HMGCS2P54868 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 AC009949.1-201ENST00000623048 1830 ntBASIC20.42■□□□□ 0.86
HMGCS2P54868 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.42■□□□□ 0.86
HMGCS2P54868 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 PRSS29P-201ENST00000440800 595 ntBASIC20.42■□□□□ 0.86
HMGCS2P54868 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
HMGCS2P54868 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.42■□□□□ 0.86
HMGCS2P54868 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
HMGCS2P54868 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.42■□□□□ 0.86
HMGCS2P54868 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 KRT18P28-201ENST00000453838 1332 ntBASIC20.42■□□□□ 0.86
HMGCS2P54868 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.42■□□□□ 0.86
HMGCS2P54868 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.42■□□□□ 0.86
HMGCS2P54868 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.42■□□□□ 0.86
HMGCS2P54868 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC20.42■□□□□ 0.86
HMGCS2P54868 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGCS2P54868 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
HMGCS2P54868 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
HMGCS2P54868 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.41■□□□□ 0.86
HMGCS2P54868 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
HMGCS2P54868 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC20.41■□□□□ 0.86
HMGCS2P54868 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.41■□□□□ 0.86
HMGCS2P54868 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC20.41■□□□□ 0.86
HMGCS2P54868 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.41■□□□□ 0.86
HMGCS2P54868 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.41■□□□□ 0.86
HMGCS2P54868 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGCS2P54868 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms