Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN9P43378 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.48■□□□□ 0.55
PTPN9P43378 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
PTPN9P43378 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.48■□□□□ 0.55
PTPN9P43378 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.48■□□□□ 0.55
PTPN9P43378 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.48■□□□□ 0.55
PTPN9P43378 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.48■□□□□ 0.55
PTPN9P43378 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
PTPN9P43378 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN9P43378 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.48■□□□□ 0.55
PTPN9P43378 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN9P43378 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
PTPN9P43378 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
PTPN9P43378 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN9P43378 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN9P43378 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN9P43378 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.48■□□□□ 0.55
PTPN9P43378 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.47■□□□□ 0.55
PTPN9P43378 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.47■□□□□ 0.55
PTPN9P43378 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.47■□□□□ 0.55
PTPN9P43378 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 LINC00265-3P-201ENST00000447588 903 ntBASIC18.47■□□□□ 0.55
PTPN9P43378 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.47■□□□□ 0.55
PTPN9P43378 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.47■□□□□ 0.55
PTPN9P43378 AC122714.2-201ENST00000502787 707 ntBASIC18.47■□□□□ 0.55
PTPN9P43378 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.47■□□□□ 0.55
PTPN9P43378 AC009533.2-201ENST00000543664 586 ntBASIC18.47■□□□□ 0.55
PTPN9P43378 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PTPN9P43378 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.47■□□□□ 0.55
PTPN9P43378 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
PTPN9P43378 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.47■□□□□ 0.55
PTPN9P43378 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.47■□□□□ 0.55
PTPN9P43378 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
PTPN9P43378 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.47■□□□□ 0.55
PTPN9P43378 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.47■□□□□ 0.55
PTPN9P43378 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PTPN9P43378 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.47■□□□□ 0.55
PTPN9P43378 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PTPN9P43378 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.47■□□□□ 0.55
PTPN9P43378 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.47■□□□□ 0.55
PTPN9P43378 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN9P43378 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.46■□□□□ 0.55
PTPN9P43378 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN9P43378 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN9P43378 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.46■□□□□ 0.55
PTPN9P43378 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN9P43378 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN9P43378 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN9P43378 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
PTPN9P43378 IGHV3-47-201ENST00000425060 335 ntBASIC18.46■□□□□ 0.55
PTPN9P43378 KRT17P6-201ENST00000453795 1220 ntBASIC18.46■□□□□ 0.55
PTPN9P43378 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.46■□□□□ 0.55
PTPN9P43378 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN9P43378 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.46■□□□□ 0.55
PTPN9P43378 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.46■□□□□ 0.55
PTPN9P43378 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN9P43378 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN9P43378 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN9P43378 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN9P43378 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.46■□□□□ 0.55
PTPN9P43378 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN9P43378 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.46■□□□□ 0.55
PTPN9P43378 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.46■□□□□ 0.54
PTPN9P43378 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.45■□□□□ 0.54
PTPN9P43378 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.45■□□□□ 0.54
PTPN9P43378 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.45■□□□□ 0.54
PTPN9P43378 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
PTPN9P43378 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.45■□□□□ 0.54
PTPN9P43378 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
PTPN9P43378 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.45■□□□□ 0.54
PTPN9P43378 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 FAM220CP-201ENST00000395253 831 ntBASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms