Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.94■□□□□ 0.3
COL5A1P20908 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.94■□□□□ 0.3
COL5A1P20908 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL5A1P20908 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.94■□□□□ 0.3
COL5A1P20908 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL5A1P20908 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL5A1P20908 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.93■□□□□ 0.3
COL5A1P20908 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL5A1P20908 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
COL5A1P20908 BX276092.7-203ENST00000637198 1536 ntBASIC16.93■□□□□ 0.3
COL5A1P20908 AC009336.1-201ENST00000608941 1553 ntBASIC16.93■□□□□ 0.3
COL5A1P20908 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL5A1P20908 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
COL5A1P20908 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL5A1P20908 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL5A1P20908 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.93■□□□□ 0.3
COL5A1P20908 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL5A1P20908 AC090164.3-201ENST00000610780 2143 ntBASIC16.93■□□□□ 0.3
COL5A1P20908 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL5A1P20908 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL5A1P20908 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL5A1P20908 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.93■□□□□ 0.3
COL5A1P20908 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
COL5A1P20908 FAM8A3P-201ENST00000427218 844 ntBASIC16.93■□□□□ 0.3
COL5A1P20908 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.93■□□□□ 0.3
COL5A1P20908 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.93■□□□□ 0.3
COL5A1P20908 AC109462.3-201ENST00000573934 613 ntBASIC16.93■□□□□ 0.3
COL5A1P20908 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.93■□□□□ 0.3
COL5A1P20908 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.93■□□□□ 0.3
COL5A1P20908 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL5A1P20908 AC004408.2-201ENST00000623613 2777 ntBASIC16.93■□□□□ 0.3
COL5A1P20908 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.92■□□□□ 0.3
COL5A1P20908 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
COL5A1P20908 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.92■□□□□ 0.3
COL5A1P20908 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.92■□□□□ 0.3
COL5A1P20908 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
COL5A1P20908 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.92■□□□□ 0.3
COL5A1P20908 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.92■□□□□ 0.3
COL5A1P20908 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
COL5A1P20908 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.92■□□□□ 0.3
COL5A1P20908 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.92■□□□□ 0.3
COL5A1P20908 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
COL5A1P20908 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL5A1P20908 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.91■□□□□ 0.3
COL5A1P20908 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
COL5A1P20908 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
COL5A1P20908 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.91■□□□□ 0.3
COL5A1P20908 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.91■□□□□ 0.3
COL5A1P20908 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.91■□□□□ 0.3
COL5A1P20908 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.91■□□□□ 0.3
COL5A1P20908 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.91■□□□□ 0.3
COL5A1P20908 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
COL5A1P20908 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
COL5A1P20908 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
COL5A1P20908 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.91■□□□□ 0.3
COL5A1P20908 AL020996.1-203ENST00000536896 2307 ntBASIC16.91■□□□□ 0.3
COL5A1P20908 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.91■□□□□ 0.3
COL5A1P20908 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.91■□□□□ 0.3
COL5A1P20908 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.91■□□□□ 0.3
COL5A1P20908 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
COL5A1P20908 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.91■□□□□ 0.3
COL5A1P20908 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.91■□□□□ 0.3
COL5A1P20908 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL5A1P20908 MIR770-201ENST00000390219 98 ntBASIC16.91■□□□□ 0.3
COL5A1P20908 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.91■□□□□ 0.3
COL5A1P20908 AL035633.1-201ENST00000406139 838 ntBASIC16.91■□□□□ 0.3
COL5A1P20908 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.91■□□□□ 0.3
COL5A1P20908 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms