Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AP003733.1-201ENST00000491725 852 ntBASIC16.95■□□□□ 0.3
SDC1P18827 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC1P18827 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.95■□□□□ 0.3
SDC1P18827 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.95■□□□□ 0.3
SDC1P18827 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
SDC1P18827 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SDC1P18827 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.95■□□□□ 0.3
SDC1P18827 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.95■□□□□ 0.3
SDC1P18827 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.95■□□□□ 0.3
SDC1P18827 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC1P18827 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SDC1P18827 PCDHA12-202ENST00000613593 2588 ntBASIC16.95■□□□□ 0.3
SDC1P18827 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.95■□□□□ 0.3
SDC1P18827 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.95■□□□□ 0.3
SDC1P18827 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC1P18827 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.95■□□□□ 0.3
SDC1P18827 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC1P18827 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SDC1P18827 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.95■□□□□ 0.3
SDC1P18827 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SDC1P18827 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.95■□□□□ 0.3
SDC1P18827 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC1P18827 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.95■□□□□ 0.3
SDC1P18827 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.95■□□□□ 0.3
SDC1P18827 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SDC1P18827 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
SDC1P18827 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.94■□□□□ 0.3
SDC1P18827 MIR662-201ENST00000384847 95 ntBASIC16.94■□□□□ 0.3
SDC1P18827 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.94■□□□□ 0.3
SDC1P18827 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.94■□□□□ 0.3
SDC1P18827 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.94■□□□□ 0.3
SDC1P18827 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.94■□□□□ 0.3
SDC1P18827 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
SDC1P18827 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
SDC1P18827 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SDC1P18827 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SDC1P18827 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SDC1P18827 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 AC009053.2-201ENST00000563701 2365 ntBASIC16.94■□□□□ 0.3
SDC1P18827 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
SDC1P18827 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDC1P18827 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.93■□□□□ 0.3
SDC1P18827 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 AL353692.3-201ENST00000407031 1396 ntBASIC16.93■□□□□ 0.3
SDC1P18827 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SDC1P18827 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 HBZP1-201ENST00000354915 429 ntBASIC16.93■□□□□ 0.3
SDC1P18827 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 KRT18P57-201ENST00000443599 1254 ntBASIC16.93■□□□□ 0.3
SDC1P18827 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.93■□□□□ 0.3
SDC1P18827 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.93■□□□□ 0.3
SDC1P18827 ZNF444P1-201ENST00000559497 298 ntBASIC16.93■□□□□ 0.3
SDC1P18827 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.93■□□□□ 0.3
SDC1P18827 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.93■□□□□ 0.3
SDC1P18827 AC006011.2-201ENST00000621313 1158 ntBASIC16.93■□□□□ 0.3
SDC1P18827 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.93■□□□□ 0.3
SDC1P18827 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SDC1P18827 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SDC1P18827 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.93■□□□□ 0.3
SDC1P18827 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC1P18827 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.92■□□□□ 0.3
SDC1P18827 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SDC1P18827 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.92■□□□□ 0.3
SDC1P18827 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC1P18827 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.92■□□□□ 0.3
SDC1P18827 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms