Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
APOEP02649 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.65■□□□□ 0.58
APOEP02649 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
APOEP02649 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.65■□□□□ 0.58
APOEP02649 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
APOEP02649 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.65■□□□□ 0.58
APOEP02649 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
APOEP02649 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
APOEP02649 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
APOEP02649 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
APOEP02649 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
APOEP02649 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
APOEP02649 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.65■□□□□ 0.58
APOEP02649 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
APOEP02649 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
APOEP02649 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
APOEP02649 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
APOEP02649 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
APOEP02649 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.65■□□□□ 0.58
APOEP02649 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.65■□□□□ 0.58
APOEP02649 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.65■□□□□ 0.58
APOEP02649 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
APOEP02649 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
APOEP02649 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
APOEP02649 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.64■□□□□ 0.58
APOEP02649 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.64■□□□□ 0.58
APOEP02649 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 SLC25A6P5-201ENST00000435663 894 ntBASIC18.64■□□□□ 0.57
APOEP02649 AC112698.1-201ENST00000510299 916 ntBASIC18.64■□□□□ 0.57
APOEP02649 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.64■□□□□ 0.57
APOEP02649 AC012615.1-201ENST00000565797 1299 ntBASIC18.64■□□□□ 0.57
APOEP02649 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.64■□□□□ 0.57
APOEP02649 MIR3652-201ENST00000579335 131 ntBASIC18.64■□□□□ 0.57
APOEP02649 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.64■□□□□ 0.57
APOEP02649 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.64■□□□□ 0.57
APOEP02649 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.64■□□□□ 0.57
APOEP02649 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
APOEP02649 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
APOEP02649 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.64■□□□□ 0.57
APOEP02649 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.64■□□□□ 0.57
APOEP02649 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
APOEP02649 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
APOEP02649 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
APOEP02649 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.63■□□□□ 0.57
APOEP02649 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
APOEP02649 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.63■□□□□ 0.57
APOEP02649 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
APOEP02649 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.63■□□□□ 0.57
APOEP02649 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.63■□□□□ 0.57
APOEP02649 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.63■□□□□ 0.57
APOEP02649 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 AC074051.2-201ENST00000565115 352 ntBASIC18.63■□□□□ 0.57
APOEP02649 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.63■□□□□ 0.57
APOEP02649 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.63■□□□□ 0.57
APOEP02649 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.63■□□□□ 0.57
APOEP02649 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
APOEP02649 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.63■□□□□ 0.57
APOEP02649 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.63■□□□□ 0.57
APOEP02649 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
APOEP02649 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
APOEP02649 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
APOEP02649 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
APOEP02649 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
APOEP02649 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.62■□□□□ 0.57
APOEP02649 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
APOEP02649 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
APOEP02649 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
APOEP02649 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
APOEP02649 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms