Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TNFP01375 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 BX005266.1-201ENST00000473402 457 ntBASIC17.35■□□□□ 0.37
TNFP01375 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.35■□□□□ 0.37
TNFP01375 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.35■□□□□ 0.37
TNFP01375 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 AC025062.2-201ENST00000605477 670 ntBASIC17.35■□□□□ 0.37
TNFP01375 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.35■□□□□ 0.37
TNFP01375 AC073592.5-201ENST00000624854 528 ntBASIC17.35■□□□□ 0.37
TNFP01375 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 HLA-J-201ENST00000462773 1622 ntBASIC17.35■□□□□ 0.37
TNFP01375 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TNFP01375 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TNFP01375 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
TNFP01375 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.34■□□□□ 0.37
TNFP01375 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TNFP01375 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TNFP01375 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.34■□□□□ 0.37
TNFP01375 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.34■□□□□ 0.37
TNFP01375 RPL13AP23-201ENST00000480739 586 ntBASIC17.34■□□□□ 0.37
TNFP01375 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
TNFP01375 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.34■□□□□ 0.37
TNFP01375 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.34■□□□□ 0.37
TNFP01375 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TNFP01375 BX276092.7-203ENST00000637198 1536 ntBASIC17.34■□□□□ 0.37
TNFP01375 AL022326.1-202ENST00000641533 845 ntBASIC17.34■□□□□ 0.37
TNFP01375 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TNFP01375 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TNFP01375 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TNFP01375 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
TNFP01375 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.33■□□□□ 0.36
TNFP01375 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFP01375 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFP01375 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFP01375 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TNFP01375 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
TNFP01375 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
TNFP01375 DDX43P3-201ENST00000441064 443 ntBASIC17.33■□□□□ 0.36
TNFP01375 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.33■□□□□ 0.36
TNFP01375 AC106730.1-201ENST00000566722 1090 ntBASIC17.33■□□□□ 0.36
TNFP01375 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.33■□□□□ 0.36
TNFP01375 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.33■□□□□ 0.36
TNFP01375 AC090340.1-201ENST00000620778 4980 ntBASIC17.33■□□□□ 0.36
TNFP01375 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TNFP01375 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.33■□□□□ 0.36
TNFP01375 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TNFP01375 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
TNFP01375 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TNFP01375 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.33■□□□□ 0.36
TNFP01375 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
TNFP01375 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 ZNF259P1-201ENST00000407656 1365 ntBASIC17.32■□□□□ 0.36
TNFP01375 AC100803.2-201ENST00000562459 1963 ntBASIC17.32■□□□□ 0.36
TNFP01375 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.32■□□□□ 0.36
TNFP01375 PRYP5-201ENST00000451909 266 ntBASIC17.32■□□□□ 0.36
TNFP01375 AC092910.1-201ENST00000482027 1129 ntBASIC17.32■□□□□ 0.36
TNFP01375 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.32■□□□□ 0.36
TNFP01375 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.32■□□□□ 0.36
TNFP01375 SLC25A1P1-201ENST00000528351 927 ntBASIC17.32■□□□□ 0.36
TNFP01375 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.32■□□□□ 0.36
TNFP01375 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.32■□□□□ 0.36
TNFP01375 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.32■□□□□ 0.36
TNFP01375 AC107918.4-202ENST00000641623 219 ntBASIC17.32■□□□□ 0.36
TNFP01375 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.32■□□□□ 0.36
TNFP01375 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TNFP01375 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.32■□□□□ 0.36
TNFP01375 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms