Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AC096582.2-201ENST00000510860 516 ntBASIC16.57■□□□□ 0.24
PRKNO60260 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.57■□□□□ 0.24
PRKNO60260 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.57■□□□□ 0.24
PRKNO60260 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PRKNO60260 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PRKNO60260 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.57■□□□□ 0.24
PRKNO60260 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.57■□□□□ 0.24
PRKNO60260 IFNL4P1-201ENST00000607083 540 ntBASIC16.57■□□□□ 0.24
PRKNO60260 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PRKNO60260 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PRKNO60260 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.57■□□□□ 0.24
PRKNO60260 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PRKNO60260 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PRKNO60260 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
PRKNO60260 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PRKNO60260 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.57■□□□□ 0.24
PRKNO60260 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PRKNO60260 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PRKNO60260 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PRKNO60260 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PRKNO60260 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.56■□□□□ 0.24
PRKNO60260 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PRKNO60260 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.56■□□□□ 0.24
PRKNO60260 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.56■□□□□ 0.24
PRKNO60260 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.56■□□□□ 0.24
PRKNO60260 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.56■□□□□ 0.24
PRKNO60260 AC091304.2-201ENST00000564639 760 ntBASIC16.56■□□□□ 0.24
PRKNO60260 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.56■□□□□ 0.24
PRKNO60260 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 AC009949.1-201ENST00000623048 1830 ntBASIC16.56■□□□□ 0.24
PRKNO60260 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.56■□□□□ 0.24
PRKNO60260 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.56■□□□□ 0.24
PRKNO60260 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.56■□□□□ 0.24
PRKNO60260 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PRKNO60260 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PRKNO60260 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 FLJ13224-201ENST00000313737 1514 ntBASIC16.55■□□□□ 0.24
PRKNO60260 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.55■□□□□ 0.24
PRKNO60260 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.55■□□□□ 0.24
PRKNO60260 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.55■□□□□ 0.24
PRKNO60260 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
PRKNO60260 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.55■□□□□ 0.24
PRKNO60260 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.55■□□□□ 0.24
PRKNO60260 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
PRKNO60260 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.55■□□□□ 0.24
PRKNO60260 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 RCN1P2-201ENST00000398357 915 ntBASIC16.55■□□□□ 0.24
PRKNO60260 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.55■□□□□ 0.24
PRKNO60260 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.55■□□□□ 0.24
PRKNO60260 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.55■□□□□ 0.24
PRKNO60260 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.55■□□□□ 0.24
PRKNO60260 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.55■□□□□ 0.24
PRKNO60260 AL121772.3-201ENST00000610840 674 ntBASIC16.55■□□□□ 0.24
PRKNO60260 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.55■□□□□ 0.24
PRKNO60260 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
PRKNO60260 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
PRKNO60260 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
PRKNO60260 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
PRKNO60260 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PRKNO60260 TP73-AS1-210ENST00000637775 1455 ntBASIC16.54■□□□□ 0.24
PRKNO60260 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.54■□□□□ 0.24
PRKNO60260 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
PRKNO60260 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.54■□□□□ 0.24
PRKNO60260 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms