Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLDN3O15551 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.45■□□□□ 0.7
CLDN3O15551 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
CLDN3O15551 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.45■□□□□ 0.7
CLDN3O15551 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CLDN3O15551 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLDN3O15551 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CLDN3O15551 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CLDN3O15551 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.44■□□□□ 0.7
CLDN3O15551 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.44■□□□□ 0.7
CLDN3O15551 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CLDN3O15551 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.44■□□□□ 0.7
CLDN3O15551 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.44■□□□□ 0.7
CLDN3O15551 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 RCN1P2-201ENST00000398357 915 ntBASIC19.44■□□□□ 0.7
CLDN3O15551 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.44■□□□□ 0.7
CLDN3O15551 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CLDN3O15551 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.44■□□□□ 0.7
CLDN3O15551 MIR5100-201ENST00000579544 119 ntBASIC19.44■□□□□ 0.7
CLDN3O15551 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 LINC01711-201ENST00000598340 967 ntBASIC19.44■□□□□ 0.7
CLDN3O15551 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.44■□□□□ 0.7
CLDN3O15551 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
CLDN3O15551 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.44■□□□□ 0.7
CLDN3O15551 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.44■□□□□ 0.7
CLDN3O15551 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CLDN3O15551 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.44■□□□□ 0.7
CLDN3O15551 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLDN3O15551 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CLDN3O15551 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.43■□□□□ 0.7
CLDN3O15551 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CLDN3O15551 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CLDN3O15551 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.43■□□□□ 0.7
CLDN3O15551 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 AC007967.3-201ENST00000434308 558 ntBASIC19.43■□□□□ 0.7
CLDN3O15551 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.43■□□□□ 0.7
CLDN3O15551 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.43■□□□□ 0.7
CLDN3O15551 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.43■□□□□ 0.7
CLDN3O15551 AC011467.2-201ENST00000598425 242 ntBASIC19.43■□□□□ 0.7
CLDN3O15551 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CLDN3O15551 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CLDN3O15551 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.43■□□□□ 0.7
CLDN3O15551 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
CLDN3O15551 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLDN3O15551 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.42■□□□□ 0.7
CLDN3O15551 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.42■□□□□ 0.7
CLDN3O15551 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.42■□□□□ 0.7
CLDN3O15551 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
CLDN3O15551 AC067852.2-201ENST00000590513 2313 ntBASIC19.42■□□□□ 0.7
CLDN3O15551 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.42■□□□□ 0.7
CLDN3O15551 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.42■□□□□ 0.7
CLDN3O15551 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.42■□□□□ 0.7
CLDN3O15551 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.42■□□□□ 0.7
CLDN3O15551 AC111152.3-201ENST00000569699 673 ntBASIC19.42■□□□□ 0.7
CLDN3O15551 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CLDN3O15551 AL591684.3-201ENST00000605187 298 ntBASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms