Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CCDC88BA6NC98 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC30.56■■■□□ 2.48
CCDC88BA6NC98 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC30.56■■■□□ 2.48
CCDC88BA6NC98 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
CCDC88BA6NC98 AC092919.2-201ENST00000623631 1645 ntBASIC30.56■■■□□ 2.48
CCDC88BA6NC98 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC30.56■■■□□ 2.48
CCDC88BA6NC98 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CCDC88BA6NC98 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
CCDC88BA6NC98 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC30.56■■■□□ 2.48
CCDC88BA6NC98 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
CCDC88BA6NC98 AC004461.1-201ENST00000412461 403 ntBASIC30.56■■■□□ 2.48
CCDC88BA6NC98 FAM8A3P-201ENST00000427218 844 ntBASIC30.56■■■□□ 2.48
CCDC88BA6NC98 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 MIR770-201ENST00000390219 98 ntBASIC30.55■■■□□ 2.48
CCDC88BA6NC98 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC30.55■■■□□ 2.48
CCDC88BA6NC98 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
CCDC88BA6NC98 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC88BA6NC98 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC88BA6NC98 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC88BA6NC98 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC88BA6NC98 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC88BA6NC98 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC88BA6NC98 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC88BA6NC98 AC022145.2-201ENST00000598203 171 ntBASIC30.54■■■□□ 2.48
CCDC88BA6NC98 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC30.54■■■□□ 2.48
CCDC88BA6NC98 ACTL9-202ENST00000612068 1252 ntBASIC30.54■■■□□ 2.48
CCDC88BA6NC98 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CCDC88BA6NC98 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
CCDC88BA6NC98 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
CCDC88BA6NC98 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
CCDC88BA6NC98 AL035633.1-201ENST00000406139 838 ntBASIC30.53■■■□□ 2.48
CCDC88BA6NC98 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC30.53■■■□□ 2.48
CCDC88BA6NC98 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC30.53■■■□□ 2.48
CCDC88BA6NC98 AC023141.13-201ENST00000604991 943 ntBASIC30.53■■■□□ 2.48
CCDC88BA6NC98 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
CCDC88BA6NC98 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
CCDC88BA6NC98 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
CCDC88BA6NC98 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
CCDC88BA6NC98 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 CXCL1P1-201ENST00000502804 216 ntBASIC30.52■■■□□ 2.48
CCDC88BA6NC98 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 AC105339.1-204ENST00000636249 355 ntBASIC30.52■■■□□ 2.48
CCDC88BA6NC98 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CCDC88BA6NC98 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
CCDC88BA6NC98 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC30.51■■■□□ 2.48
CCDC88BA6NC98 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC30.51■■■□□ 2.48
CCDC88BA6NC98 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC30.51■■■□□ 2.48
CCDC88BA6NC98 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC30.51■■■□□ 2.48
CCDC88BA6NC98 IGHV3-52-201ENST00000519770 353 ntBASIC30.51■■■□□ 2.48
CCDC88BA6NC98 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
CCDC88BA6NC98 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC30.51■■■□□ 2.48
CCDC88BA6NC98 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC30.51■■■□□ 2.47
CCDC88BA6NC98 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC30.51■■■□□ 2.47
CCDC88BA6NC98 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC30.51■■■□□ 2.47
CCDC88BA6NC98 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CCDC88BA6NC98 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC30.51■■■□□ 2.47
CCDC88BA6NC98 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
CCDC88BA6NC98 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CCDC88BA6NC98 AC135776.1-201ENST00000319817 2481 ntBASIC30.51■■■□□ 2.47
CCDC88BA6NC98 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
CCDC88BA6NC98 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 CCND1-203ENST00000536559 553 ntTSL 3 BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 AC006116.8-202ENST00000587620 1550 ntBASIC30.5■■■□□ 2.47
CCDC88BA6NC98 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 SLC25A24-204ENST00000569674 2357 ntBASIC30.5■■■□□ 2.47
CCDC88BA6NC98 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 FLYWCH1P1-201ENST00000460917 1874 ntBASIC30.5■■■□□ 2.47
CCDC88BA6NC98 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC30.5■■■□□ 2.47
CCDC88BA6NC98 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms