Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
PTCHD3Q3KNS1 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
PTCHD3Q3KNS1 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
PTCHD3Q3KNS1 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.02■■□□□ 1.44
PTCHD3Q3KNS1 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PTCHD3Q3KNS1 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCHD3Q3KNS1 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCHD3Q3KNS1 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.01■■□□□ 1.43
PTCHD3Q3KNS1 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PTCHD3Q3KNS1 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PTCHD3Q3KNS1 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PTCHD3Q3KNS1 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
PTCHD3Q3KNS1 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
PTCHD3Q3KNS1 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24■■□□□ 1.43
PTCHD3Q3KNS1 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
PTCHD3Q3KNS1 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC24■■□□□ 1.43
PTCHD3Q3KNS1 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.99■■□□□ 1.43
PTCHD3Q3KNS1 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
PTCHD3Q3KNS1 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.99■■□□□ 1.43
PTCHD3Q3KNS1 AC142472.1-201ENST00000612013 1741 ntBASIC23.98■■□□□ 1.43
PTCHD3Q3KNS1 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PTCHD3Q3KNS1 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
PTCHD3Q3KNS1 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.98■■□□□ 1.43
PTCHD3Q3KNS1 RNF126P1-201ENST00000567452 1320 ntBASIC23.98■■□□□ 1.43
PTCHD3Q3KNS1 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PTCHD3Q3KNS1 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
PTCHD3Q3KNS1 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
PTCHD3Q3KNS1 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.97■■□□□ 1.43
PTCHD3Q3KNS1 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PTCHD3Q3KNS1 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD3Q3KNS1 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD3Q3KNS1 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD3Q3KNS1 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.96■■□□□ 1.43
PTCHD3Q3KNS1 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD3Q3KNS1 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.96■■□□□ 1.43
PTCHD3Q3KNS1 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.96■■□□□ 1.43
PTCHD3Q3KNS1 AL359258.2-201ENST00000564063 1566 ntBASIC23.95■■□□□ 1.42
PTCHD3Q3KNS1 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.94■■□□□ 1.42
PTCHD3Q3KNS1 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.94■■□□□ 1.42
PTCHD3Q3KNS1 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.94■■□□□ 1.42
PTCHD3Q3KNS1 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.94■■□□□ 1.42
PTCHD3Q3KNS1 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
PTCHD3Q3KNS1 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.94■■□□□ 1.42
PTCHD3Q3KNS1 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
PTCHD3Q3KNS1 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
PTCHD3Q3KNS1 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.93■■□□□ 1.42
PTCHD3Q3KNS1 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.93■■□□□ 1.42
PTCHD3Q3KNS1 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
PTCHD3Q3KNS1 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.92■■□□□ 1.42
PTCHD3Q3KNS1 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.92■■□□□ 1.42
PTCHD3Q3KNS1 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
PTCHD3Q3KNS1 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.92■■□□□ 1.42
PTCHD3Q3KNS1 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PTCHD3Q3KNS1 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.91■■□□□ 1.42
PTCHD3Q3KNS1 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
PTCHD3Q3KNS1 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.91■■□□□ 1.42
PTCHD3Q3KNS1 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
PTCHD3Q3KNS1 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PTCHD3Q3KNS1 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.9■■□□□ 1.42
PTCHD3Q3KNS1 ABHD17AP5-201ENST00000580133 923 ntBASIC23.9■■□□□ 1.42
PTCHD3Q3KNS1 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
PTCHD3Q3KNS1 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
PTCHD3Q3KNS1 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.42
PTCHD3Q3KNS1 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.89■■□□□ 1.41
PTCHD3Q3KNS1 AC060814.1-201ENST00000554326 538 ntBASIC23.89■■□□□ 1.41
PTCHD3Q3KNS1 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.89■■□□□ 1.41
PTCHD3Q3KNS1 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
PTCHD3Q3KNS1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
PTCHD3Q3KNS1 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
PTCHD3Q3KNS1 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PTCHD3Q3KNS1 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PTCHD3Q3KNS1 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PTCHD3Q3KNS1 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.87■■□□□ 1.41
PTCHD3Q3KNS1 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PTCHD3Q3KNS1 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC23.87■■□□□ 1.41
PTCHD3Q3KNS1 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.87■■□□□ 1.41
PTCHD3Q3KNS1 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.86■■□□□ 1.41
PTCHD3Q3KNS1 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
PTCHD3Q3KNS1 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PTCHD3Q3KNS1 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.86■■□□□ 1.41
PTCHD3Q3KNS1 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PTCHD3Q3KNS1 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
PTCHD3Q3KNS1 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PTCHD3Q3KNS1 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
PTCHD3Q3KNS1 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PTCHD3Q3KNS1 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PTCHD3Q3KNS1 AC126177.7-201ENST00000547904 679 ntBASIC23.84■■□□□ 1.41
PTCHD3Q3KNS1 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
PTCHD3Q3KNS1 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PTCHD3Q3KNS1 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PTCHD3Q3KNS1 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
PTCHD3Q3KNS1 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.83■■□□□ 1.41
PTCHD3Q3KNS1 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PTCHD3Q3KNS1 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
PTCHD3Q3KNS1 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PTCHD3Q3KNS1 AC091060.1-201ENST00000623524 1766 ntBASIC23.82■■□□□ 1.4
PTCHD3Q3KNS1 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
PTCHD3Q3KNS1 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
PTCHD3Q3KNS1 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
PTCHD3Q3KNS1 AL359504.2-201ENST00000605506 1601 ntBASIC23.81■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms