Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC18.58■□□□□ 0.56
HLA-DMBP28068 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DMBP28068 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.58■□□□□ 0.56
HLA-DMBP28068 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.58■□□□□ 0.56
HLA-DMBP28068 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.58■□□□□ 0.56
HLA-DMBP28068 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC18.58■□□□□ 0.56
HLA-DMBP28068 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DMBP28068 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DMBP28068 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DMBP28068 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DMBP28068 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DMBP28068 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DMBP28068 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 CHST11-202ENST00000546689 756 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC18.57■□□□□ 0.56
HLA-DMBP28068 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
HLA-DMBP28068 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DMBP28068 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DMBP28068 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC18.56■□□□□ 0.56
HLA-DMBP28068 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
HLA-DMBP28068 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DMBP28068 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DMBP28068 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DMBP28068 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DMBP28068 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
HLA-DMBP28068 AGPS-202ENST00000409888 815 ntTSL 4 BASIC18.55■□□□□ 0.56
HLA-DMBP28068 GDI1-215ENST00000630693 786 ntTSL 4 BASIC18.55■□□□□ 0.56
HLA-DMBP28068 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DMBP28068 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DMBP28068 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC18.55■□□□□ 0.56
HLA-DMBP28068 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DMBP28068 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DMBP28068 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DMBP28068 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DMBP28068 MIR3648-2-201ENST00000581792 180 ntBASIC18.54■□□□□ 0.56
HLA-DMBP28068 MIR3648-1-201ENST00000615959 180 ntBASIC18.54■□□□□ 0.56
HLA-DMBP28068 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DMBP28068 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DMBP28068 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DMBP28068 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DMBP28068 RPS2-202ENST00000526522 924 ntTSL 2 BASIC18.53■□□□□ 0.56
HLA-DMBP28068 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L13-201ENST00000554103 1267 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 AC016575.1-201ENST00000607026 382 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L15-201ENST00000611059 1267 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L23-201ENST00000615195 1269 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L24-201ENST00000617576 1269 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L22-201ENST00000618238 1269 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L20-201ENST00000619712 1269 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L21-201ENST00000622058 1269 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L10-201ENST00000622460 1267 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 DUX4L25-201ENST00000624915 1269 ntBASIC18.53■□□□□ 0.56
HLA-DMBP28068 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC18.53■□□□□ 0.56
HLA-DMBP28068 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DMBP28068 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
HLA-DMBP28068 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DMBP28068 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
HLA-DMBP28068 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DMBP28068 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HLA-DMBP28068 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
HLA-DMBP28068 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC18.51■□□□□ 0.55
HLA-DMBP28068 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HLA-DMBP28068 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
HLA-DMBP28068 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HLA-DMBP28068 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC18.51■□□□□ 0.55
HLA-DMBP28068 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC18.51■□□□□ 0.55
HLA-DMBP28068 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DMBP28068 ERN1-208ENST00000606895 2068 ntBASIC18.51■□□□□ 0.55
HLA-DMBP28068 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
HLA-DMBP28068 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC18.5■□□□□ 0.55
HLA-DMBP28068 MIR639-201ENST00000384974 98 ntBASIC18.5■□□□□ 0.55
HLA-DMBP28068 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC18.5■□□□□ 0.55
HLA-DMBP28068 CR559946.2-201ENST00000623684 991 ntBASIC18.5■□□□□ 0.55
HLA-DMBP28068 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DMBP28068 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DMBP28068 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC18.49■□□□□ 0.55
HLA-DMBP28068 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DMBP28068 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DMBP28068 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DMBP28068 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DMBP28068 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HLA-DMBP28068 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC18.47■□□□□ 0.55
HLA-DMBP28068 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms