Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.74■□□□□ 0.91
USF1P22415 AC093536.1-201ENST00000569153 554 ntBASIC20.74■□□□□ 0.91
USF1P22415 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.74■□□□□ 0.91
USF1P22415 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
USF1P22415 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
USF1P22415 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USF1P22415 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USF1P22415 BHLHE23-202ENST00000612929 1109 ntBASIC20.72■□□□□ 0.91
USF1P22415 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.72■□□□□ 0.91
USF1P22415 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.72■□□□□ 0.91
USF1P22415 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USF1P22415 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
USF1P22415 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USF1P22415 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USF1P22415 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
USF1P22415 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USF1P22415 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.7■□□□□ 0.9
USF1P22415 DUX4L9-201ENST00000449051 1259 ntBASIC20.7■□□□□ 0.9
USF1P22415 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.7■□□□□ 0.9
USF1P22415 MIR3960-201ENST00000583311 91 ntBASIC20.7■□□□□ 0.9
USF1P22415 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
USF1P22415 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USF1P22415 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.69■□□□□ 0.9
USF1P22415 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
USF1P22415 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USF1P22415 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USF1P22415 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.69■□□□□ 0.9
USF1P22415 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
USF1P22415 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.69■□□□□ 0.9
USF1P22415 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USF1P22415 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
USF1P22415 AP002414.2-202ENST00000590929 1450 ntBASIC20.69■□□□□ 0.9
USF1P22415 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
USF1P22415 RAP2CP1-202ENST00000605179 643 ntBASIC20.68■□□□□ 0.9
USF1P22415 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
USF1P22415 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USF1P22415 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
USF1P22415 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.67■□□□□ 0.9
USF1P22415 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
USF1P22415 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USF1P22415 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
USF1P22415 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
USF1P22415 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.66■□□□□ 0.9
USF1P22415 AC074183.2-201ENST00000623112 922 ntBASIC20.66■□□□□ 0.9
USF1P22415 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
USF1P22415 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.66■□□□□ 0.9
USF1P22415 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.65■□□□□ 0.9
USF1P22415 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
USF1P22415 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USF1P22415 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USF1P22415 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.64■□□□□ 0.9
USF1P22415 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
USF1P22415 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USF1P22415 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USF1P22415 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USF1P22415 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USF1P22415 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USF1P22415 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
USF1P22415 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.63■□□□□ 0.89
USF1P22415 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USF1P22415 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.63■□□□□ 0.89
USF1P22415 AC139795.1-202ENST00000500444 432 ntBASIC20.63■□□□□ 0.89
USF1P22415 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.63■□□□□ 0.89
USF1P22415 MIR6765-201ENST00000614092 87 ntBASIC20.63■□□□□ 0.89
USF1P22415 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USF1P22415 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USF1P22415 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
USF1P22415 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USF1P22415 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USF1P22415 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USF1P22415 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.62■□□□□ 0.89
USF1P22415 AL035685.1-201ENST00000636663 812 ntBASIC20.62■□□□□ 0.89
USF1P22415 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USF1P22415 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USF1P22415 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.62■□□□□ 0.89
USF1P22415 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
USF1P22415 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.61■□□□□ 0.89
USF1P22415 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
USF1P22415 AC010980.1-201ENST00000587192 1142 ntBASIC20.61■□□□□ 0.89
USF1P22415 AC018755.3-202ENST00000596210 929 ntBASIC20.61■□□□□ 0.89
USF1P22415 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF1P22415 SPCS2P3-201ENST00000500401 656 ntBASIC20.6■□□□□ 0.89
USF1P22415 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.6■□□□□ 0.89
USF1P22415 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USF1P22415 AL451085.2-201ENST00000605085 799 ntBASIC20.6■□□□□ 0.89
USF1P22415 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USF1P22415 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
USF1P22415 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USF1P22415 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
USF1P22415 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.59■□□□□ 0.89
USF1P22415 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USF1P22415 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms