Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
TPM1P09493 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
TPM1P09493 PEX7-203ENST00000541292 945 ntTSL 5 BASIC26.81■■□□□ 1.88
TPM1P09493 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
TPM1P09493 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26.81■■□□□ 1.88
TPM1P09493 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
TPM1P09493 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC26.81■■□□□ 1.88
TPM1P09493 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
TPM1P09493 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.8■■□□□ 1.88
TPM1P09493 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC26.8■■□□□ 1.88
TPM1P09493 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
TPM1P09493 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.8■■□□□ 1.88
TPM1P09493 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
TPM1P09493 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
TPM1P09493 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
TPM1P09493 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
TPM1P09493 AP006261.1-201ENST00000584783 668 ntBASIC26.79■■□□□ 1.88
TPM1P09493 LTK-203ENST00000453182 2412 ntTSL 2 BASIC26.79■■□□□ 1.88
TPM1P09493 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC26.79■■□□□ 1.88
TPM1P09493 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
TPM1P09493 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
TPM1P09493 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
TPM1P09493 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
TPM1P09493 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC26.78■■□□□ 1.88
TPM1P09493 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
TPM1P09493 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.77■■□□□ 1.88
TPM1P09493 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC26.77■■□□□ 1.88
TPM1P09493 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
TPM1P09493 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
TPM1P09493 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC26.76■■□□□ 1.87
TPM1P09493 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
TPM1P09493 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC26.75■■□□□ 1.87
TPM1P09493 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
TPM1P09493 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
TPM1P09493 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.75■■□□□ 1.87
TPM1P09493 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC26.75■■□□□ 1.87
TPM1P09493 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
TPM1P09493 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
TPM1P09493 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
TPM1P09493 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC26.74■■□□□ 1.87
TPM1P09493 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
TPM1P09493 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
TPM1P09493 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
TPM1P09493 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
TPM1P09493 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.74■■□□□ 1.87
TPM1P09493 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
TPM1P09493 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC26.73■■□□□ 1.87
TPM1P09493 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
TPM1P09493 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
TPM1P09493 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC26.73■■□□□ 1.87
TPM1P09493 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC26.73■■□□□ 1.87
TPM1P09493 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
TPM1P09493 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
TPM1P09493 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
TPM1P09493 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
TPM1P09493 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
TPM1P09493 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC26.71■■□□□ 1.87
TPM1P09493 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
TPM1P09493 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
TPM1P09493 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
TPM1P09493 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.7■■□□□ 1.87
TPM1P09493 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
TPM1P09493 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
TPM1P09493 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
TPM1P09493 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
TPM1P09493 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
TPM1P09493 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
TPM1P09493 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.69■■□□□ 1.86
TPM1P09493 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
TPM1P09493 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
TPM1P09493 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
TPM1P09493 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC26.68■■□□□ 1.86
TPM1P09493 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
TPM1P09493 AC087741.3-201ENST00000624270 1347 ntBASIC26.67■■□□□ 1.86
TPM1P09493 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
TPM1P09493 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.67■■□□□ 1.86
TPM1P09493 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.67■■□□□ 1.86
TPM1P09493 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
TPM1P09493 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
TPM1P09493 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
TPM1P09493 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
TPM1P09493 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
TPM1P09493 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.67■■□□□ 1.86
TPM1P09493 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC26.66■■□□□ 1.86
TPM1P09493 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
TPM1P09493 AC044849.2-201ENST00000606596 710 ntBASIC26.66■■□□□ 1.86
TPM1P09493 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.66■■□□□ 1.86
TPM1P09493 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
TPM1P09493 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.65■■□□□ 1.86
TPM1P09493 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.65■■□□□ 1.86
TPM1P09493 AC010501.1-201ENST00000606270 1962 ntBASIC26.64■■□□□ 1.86
TPM1P09493 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
TPM1P09493 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.86
TPM1P09493 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.64■■□□□ 1.86
TPM1P09493 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC26.64■■□□□ 1.86
TPM1P09493 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
TPM1P09493 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
TPM1P09493 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.63■■□□□ 1.85
TPM1P09493 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
TPM1P09493 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms