Protein–RNA interactions for Protein: Q9Y696

CLIC4, Chloride intracellular channel protein 4, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4Q9Y696 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLIC4Q9Y696 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLIC4Q9Y696 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.34■□□□□ 0.85
CLIC4Q9Y696 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CLIC4Q9Y696 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLIC4Q9Y696 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 HOMER2P1-201ENST00000455653 964 ntBASIC20.33■□□□□ 0.85
CLIC4Q9Y696 AC068472.1-201ENST00000474589 881 ntBASIC20.33■□□□□ 0.85
CLIC4Q9Y696 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 LINC01023-201ENST00000606054 436 ntBASIC20.33■□□□□ 0.85
CLIC4Q9Y696 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CLIC4Q9Y696 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLIC4Q9Y696 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLIC4Q9Y696 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLIC4Q9Y696 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CLIC4Q9Y696 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CLIC4Q9Y696 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CLIC4Q9Y696 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
CLIC4Q9Y696 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CLIC4Q9Y696 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 AP001094.4-201ENST00000579008 2176 ntBASIC20.32■□□□□ 0.84
CLIC4Q9Y696 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 AC005332.3-201ENST00000589904 676 ntBASIC20.32■□□□□ 0.84
CLIC4Q9Y696 GPR32P1-201ENST00000601788 811 ntBASIC20.32■□□□□ 0.84
CLIC4Q9Y696 LINC01451-201ENST00000623792 534 ntBASIC20.32■□□□□ 0.84
CLIC4Q9Y696 LINC01311-201ENST00000565162 1445 ntBASIC20.32■□□□□ 0.84
CLIC4Q9Y696 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.32■□□□□ 0.84
CLIC4Q9Y696 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CLIC4Q9Y696 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.31■□□□□ 0.84
CLIC4Q9Y696 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CLIC4Q9Y696 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIC4Q9Y696 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIC4Q9Y696 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLIC4Q9Y696 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.3■□□□□ 0.84
CLIC4Q9Y696 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIC4Q9Y696 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms