Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.34■□□□□ 0.21
LRFN1Q9P244 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LRFN1Q9P244 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
LRFN1Q9P244 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
LRFN1Q9P244 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.33■□□□□ 0.21
LRFN1Q9P244 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LRFN1Q9P244 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
LRFN1Q9P244 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LRFN1Q9P244 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.33■□□□□ 0.21
LRFN1Q9P244 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.33■□□□□ 0.2
LRFN1Q9P244 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
LRFN1Q9P244 AL022342.1-201ENST00000400363 863 ntBASIC16.33■□□□□ 0.2
LRFN1Q9P244 RNPS1P1-201ENST00000507437 918 ntBASIC16.33■□□□□ 0.2
LRFN1Q9P244 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.33■□□□□ 0.2
LRFN1Q9P244 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.33■□□□□ 0.2
LRFN1Q9P244 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.33■□□□□ 0.2
LRFN1Q9P244 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.33■□□□□ 0.2
LRFN1Q9P244 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.33■□□□□ 0.2
LRFN1Q9P244 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.33■□□□□ 0.2
LRFN1Q9P244 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.33■□□□□ 0.2
LRFN1Q9P244 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.33■□□□□ 0.2
LRFN1Q9P244 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LRFN1Q9P244 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
LRFN1Q9P244 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LRFN1Q9P244 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 AL031284.1-201ENST00000419297 478 ntBASIC16.32■□□□□ 0.2
LRFN1Q9P244 AC096633.1-201ENST00000422446 749 ntBASIC16.32■□□□□ 0.2
LRFN1Q9P244 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 AC093909.1-201ENST00000504731 1122 ntBASIC16.32■□□□□ 0.2
LRFN1Q9P244 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 AC093677.2-201ENST00000600169 1863 ntBASIC16.32■□□□□ 0.2
LRFN1Q9P244 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
LRFN1Q9P244 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
LRFN1Q9P244 AC135776.1-201ENST00000319817 2481 ntBASIC16.31■□□□□ 0.2
LRFN1Q9P244 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRFN1Q9P244 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LRFN1Q9P244 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LRFN1Q9P244 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
LRFN1Q9P244 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.31■□□□□ 0.2
LRFN1Q9P244 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms