Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 AL031284.1-201ENST00000419297 478 ntBASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 SCARNA2-201ENST00000458748 420 ntBASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 MTDHP3-201ENST00000594186 672 ntBASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 AL133373.2-201ENST00000623187 2828 ntBASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 NOC2LP2-201ENST00000407594 1944 ntBASIC19.49■□□□□ 0.71
TRAIPQ9BWF2 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 AC090340.1-201ENST00000620778 4980 ntBASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 AC093010.1-201ENST00000473625 1624 ntBASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 AC096633.1-201ENST00000422446 749 ntBASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 RNPS1P1-201ENST00000507437 918 ntBASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 AC079776.4-201ENST00000511039 504 ntBASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 DUTP2-201ENST00000519164 463 ntBASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAIPQ9BWF2 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAIPQ9BWF2 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms