Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 AC080080.1-201ENST00000625121 2420 ntBASIC18.29■□□□□ 0.52
SKA1Q96BD8 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 AC024563.2-201ENST00000603282 481 ntBASIC18.29■□□□□ 0.52
SKA1Q96BD8 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SKA1Q96BD8 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SKA1Q96BD8 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 AC068587.9-201ENST00000641814 219 ntBASIC18.28■□□□□ 0.52
SKA1Q96BD8 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 KRT8P10-201ENST00000450021 1447 ntBASIC18.28■□□□□ 0.52
SKA1Q96BD8 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.28■□□□□ 0.52
SKA1Q96BD8 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.28■□□□□ 0.52
SKA1Q96BD8 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SKA1Q96BD8 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
SKA1Q96BD8 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.27■□□□□ 0.52
SKA1Q96BD8 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
SKA1Q96BD8 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
SKA1Q96BD8 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.27■□□□□ 0.52
SKA1Q96BD8 AC246785.2-201ENST00000432512 513 ntBASIC18.27■□□□□ 0.52
SKA1Q96BD8 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.27■□□□□ 0.52
SKA1Q96BD8 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.27■□□□□ 0.52
SKA1Q96BD8 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.27■□□□□ 0.52
SKA1Q96BD8 AL390719.2-201ENST00000606993 987 ntBASIC18.27■□□□□ 0.52
SKA1Q96BD8 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.27■□□□□ 0.52
SKA1Q96BD8 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SKA1Q96BD8 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SKA1Q96BD8 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms