Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TTC28Q96AY4 SIRPAP1-201ENST00000448467 1770 ntBASIC17.9■□□□□ 0.46
TTC28Q96AY4 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TTC28Q96AY4 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TTC28Q96AY4 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TTC28Q96AY4 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TTC28Q96AY4 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TTC28Q96AY4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 AL109936.8-201ENST00000641772 604 ntBASIC17.9■□□□□ 0.46
TTC28Q96AY4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
TTC28Q96AY4 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TTC28Q96AY4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
TTC28Q96AY4 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
TTC28Q96AY4 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.89■□□□□ 0.46
TTC28Q96AY4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
TTC28Q96AY4 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 PI4KAP1-204ENST00000612579 1703 ntBASIC17.89■□□□□ 0.45
TTC28Q96AY4 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.89■□□□□ 0.45
TTC28Q96AY4 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 AC241585.1-201ENST00000433527 519 ntBASIC17.89■□□□□ 0.45
TTC28Q96AY4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.89■□□□□ 0.45
TTC28Q96AY4 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TTC28Q96AY4 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
TTC28Q96AY4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 AC020907.5-201ENST00000624372 1936 ntBASIC17.88■□□□□ 0.45
TTC28Q96AY4 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TTC28Q96AY4 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TTC28Q96AY4 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TTC28Q96AY4 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TTC28Q96AY4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TTC28Q96AY4 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TTC28Q96AY4 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TTC28Q96AY4 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.88■□□□□ 0.45
TTC28Q96AY4 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TTC28Q96AY4 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TTC28Q96AY4 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TTC28Q96AY4 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
TTC28Q96AY4 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.87■□□□□ 0.45
TTC28Q96AY4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC17.87■□□□□ 0.45
TTC28Q96AY4 FEM1AP3-201ENST00000403722 1741 ntBASIC17.87■□□□□ 0.45
TTC28Q96AY4 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TTC28Q96AY4 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TTC28Q96AY4 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
TTC28Q96AY4 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TTC28Q96AY4 AL138828.2-201ENST00000615812 383 ntBASIC17.87■□□□□ 0.45
TTC28Q96AY4 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
TTC28Q96AY4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TTC28Q96AY4 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
TTC28Q96AY4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms