Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 AC211429.1-201ENST00000415277 523 ntBASIC16.03■□□□□ 0.16
PTP4A1Q93096 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 AC008687.5-201ENST00000593746 558 ntBASIC16.03■□□□□ 0.16
PTP4A1Q93096 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 AC012306.2-201ENST00000609350 630 ntBASIC16.03■□□□□ 0.16
PTP4A1Q93096 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 HLA-J-201ENST00000462773 1622 ntBASIC16.03■□□□□ 0.16
PTP4A1Q93096 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.03■□□□□ 0.16
PTP4A1Q93096 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTP4A1Q93096 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.02■□□□□ 0.16
PTP4A1Q93096 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTP4A1Q93096 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PTP4A1Q93096 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTP4A1Q93096 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PTP4A1Q93096 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTP4A1Q93096 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTP4A1Q93096 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTP4A1Q93096 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
PTP4A1Q93096 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTP4A1Q93096 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PTP4A1Q93096 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
PTP4A1Q93096 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTP4A1Q93096 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PTP4A1Q93096 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.02■□□□□ 0.16
PTP4A1Q93096 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTP4A1Q93096 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.02■□□□□ 0.16
PTP4A1Q93096 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.02■□□□□ 0.16
PTP4A1Q93096 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.02■□□□□ 0.16
PTP4A1Q93096 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
PTP4A1Q93096 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PTP4A1Q93096 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.02■□□□□ 0.16
PTP4A1Q93096 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.02■□□□□ 0.16
PTP4A1Q93096 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.02■□□□□ 0.16
PTP4A1Q93096 AC009949.1-201ENST00000623048 1830 ntBASIC16.02■□□□□ 0.16
PTP4A1Q93096 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTP4A1Q93096 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PTP4A1Q93096 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
PTP4A1Q93096 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
PTP4A1Q93096 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTP4A1Q93096 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.01■□□□□ 0.15
PTP4A1Q93096 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTP4A1Q93096 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.01■□□□□ 0.15
PTP4A1Q93096 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.01■□□□□ 0.15
PTP4A1Q93096 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTP4A1Q93096 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
PTP4A1Q93096 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTP4A1Q93096 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.01■□□□□ 0.15
PTP4A1Q93096 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTP4A1Q93096 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTP4A1Q93096 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTP4A1Q93096 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTP4A1Q93096 LIN28AP1-201ENST00000429574 405 ntBASIC16.01■□□□□ 0.15
PTP4A1Q93096 PVRIG2P-201ENST00000435460 978 ntBASIC16.01■□□□□ 0.15
PTP4A1Q93096 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.01■□□□□ 0.15
PTP4A1Q93096 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTP4A1Q93096 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.01■□□□□ 0.15
PTP4A1Q93096 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.01■□□□□ 0.15
PTP4A1Q93096 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.01■□□□□ 0.15
PTP4A1Q93096 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTP4A1Q93096 LINC01023-201ENST00000606054 436 ntBASIC16.01■□□□□ 0.15
PTP4A1Q93096 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.01■□□□□ 0.15
PTP4A1Q93096 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
PTP4A1Q93096 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTP4A1Q93096 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTP4A1Q93096 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.01■□□□□ 0.15
PTP4A1Q93096 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms