Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AL020996.1-203ENST00000536896 2307 ntBASIC23.19■■□□□ 1.3
RTF1Q92541 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTF1Q92541 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC23.19■■□□□ 1.3
RTF1Q92541 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTF1Q92541 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
RTF1Q92541 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTF1Q92541 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTF1Q92541 TLE1-202ENST00000376484 666 ntTSL 3 BASIC23.19■■□□□ 1.3
RTF1Q92541 AL022342.1-201ENST00000400363 863 ntBASIC23.19■■□□□ 1.3
RTF1Q92541 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTF1Q92541 AP000347.1-202ENST00000435868 847 ntBASIC23.19■■□□□ 1.3
RTF1Q92541 AC021087.4-201ENST00000563761 564 ntBASIC23.19■■□□□ 1.3
RTF1Q92541 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC23.19■■□□□ 1.3
RTF1Q92541 ABBA01031661.1-201ENST00000634362 1253 ntBASIC23.19■■□□□ 1.3
RTF1Q92541 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
RTF1Q92541 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC23.19■■□□□ 1.3
RTF1Q92541 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTF1Q92541 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTF1Q92541 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RTF1Q92541 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC23.19■■□□□ 1.3
RTF1Q92541 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC23.19■■□□□ 1.3
RTF1Q92541 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
RTF1Q92541 PMPCAP1-201ENST00000508114 1576 ntBASIC23.18■■□□□ 1.3
RTF1Q92541 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC23.18■■□□□ 1.3
RTF1Q92541 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC23.18■■□□□ 1.3
RTF1Q92541 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
RTF1Q92541 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC23.18■■□□□ 1.3
RTF1Q92541 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 RPS2P28-201ENST00000314255 741 ntBASIC23.18■■□□□ 1.3
RTF1Q92541 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 AL590627.1-203ENST00000421194 1026 ntBASIC23.18■■□□□ 1.3
RTF1Q92541 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
RTF1Q92541 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC23.18■■□□□ 1.3
RTF1Q92541 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC23.18■■□□□ 1.3
RTF1Q92541 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
RTF1Q92541 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 NKAPP1-205ENST00000585790 367 ntBASIC23.18■■□□□ 1.3
RTF1Q92541 AC120114.3-201ENST00000611923 658 ntBASIC23.18■■□□□ 1.3
RTF1Q92541 AD001527.2-201ENST00000622994 785 ntBASIC23.18■■□□□ 1.3
RTF1Q92541 SIRPAP1-201ENST00000448467 1770 ntBASIC23.18■■□□□ 1.3
RTF1Q92541 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC23.18■■□□□ 1.3
RTF1Q92541 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTF1Q92541 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC23.18■■□□□ 1.3
RTF1Q92541 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
RTF1Q92541 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC23.17■■□□□ 1.3
RTF1Q92541 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
RTF1Q92541 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
RTF1Q92541 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 AC009949.1-201ENST00000623048 1830 ntBASIC23.17■■□□□ 1.3
RTF1Q92541 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
RTF1Q92541 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
RTF1Q92541 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC23.17■■□□□ 1.3
RTF1Q92541 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 BX640515.1-201ENST00000617215 977 ntBASIC23.17■■□□□ 1.3
RTF1Q92541 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTF1Q92541 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC23.16■■□□□ 1.3
RTF1Q92541 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC23.16■■□□□ 1.3
RTF1Q92541 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RTF1Q92541 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RTF1Q92541 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC23.16■■□□□ 1.3
RTF1Q92541 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RTF1Q92541 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
RTF1Q92541 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RTF1Q92541 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RTF1Q92541 HNRNPDP1-201ENST00000439535 754 ntBASIC23.16■■□□□ 1.3
RTF1Q92541 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
RTF1Q92541 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RTF1Q92541 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC23.16■■□□□ 1.3
RTF1Q92541 PAM16-208ENST00000573553 722 ntTSL 2 BASIC23.16■■□□□ 1.3
RTF1Q92541 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
RTF1Q92541 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC23.16■■□□□ 1.3
RTF1Q92541 FAM215A-202ENST00000632077 792 ntBASIC23.16■■□□□ 1.3
RTF1Q92541 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms