Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 AP000523.1-201ENST00000398242 1049 ntBASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 HLA-J-201ENST00000462773 1622 ntBASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 KRT18P22-201ENST00000402024 1347 ntBASIC18.48■□□□□ 0.55
ATG4AQ8WYN0 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 AC113404.2-201ENST00000507884 177 ntBASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.47■□□□□ 0.55
ATG4AQ8WYN0 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ATG4AQ8WYN0 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms