Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 IGHV3OR16-7-201ENST00000604106 360 ntBASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-3Q8TAU0 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 MIR940-201ENST00000401276 94 ntBASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 PMS2P2-201ENST00000425039 1128 ntBASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 RPL13AP23-201ENST00000480739 586 ntBASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-3Q8TAU0 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 POM121L3P-201ENST00000419331 1163 ntBASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 AC007967.3-201ENST00000434308 558 ntBASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 AC140113.2-201ENST00000604370 208 ntBASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-3Q8TAU0 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 NOC2LP2-201ENST00000407594 1944 ntBASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 TP73-AS1-210ENST00000637775 1455 ntBASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms