Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 BMP1-204ENST00000397814 836 ntTSL 4 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 SPI1-203ENST00000533030 661 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 AL122018.1-201ENST00000446607 2310 ntBASIC14.91□□□□□ -0.02
CCDC28AQ8IWP9 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 KRT18P5-201ENST00000436075 1291 ntBASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 CASP6-205ENST00000505486 538 ntTSL 4 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28AQ8IWP9 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC28AQ8IWP9 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms