Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
USP54Q70EL1 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
USP54Q70EL1 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
USP54Q70EL1 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
USP54Q70EL1 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC23.53■■□□□ 1.36
USP54Q70EL1 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
USP54Q70EL1 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
USP54Q70EL1 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP54Q70EL1 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP54Q70EL1 PAWRP1-201ENST00000451083 565 ntBASIC23.53■■□□□ 1.36
USP54Q70EL1 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
USP54Q70EL1 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC23.53■■□□□ 1.36
USP54Q70EL1 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
USP54Q70EL1 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP54Q70EL1 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP54Q70EL1 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
USP54Q70EL1 USP49-202ENST00000373010 2446 ntTSL 5 BASIC23.52■■□□□ 1.36
USP54Q70EL1 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC23.52■■□□□ 1.36
USP54Q70EL1 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP54Q70EL1 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
USP54Q70EL1 AC093503.3-201ENST00000624917 2352 ntBASIC23.52■■□□□ 1.36
USP54Q70EL1 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC23.52■■□□□ 1.36
USP54Q70EL1 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
USP54Q70EL1 AL138781.2-201ENST00000617896 1843 ntBASIC23.52■■□□□ 1.36
USP54Q70EL1 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC23.52■■□□□ 1.36
USP54Q70EL1 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC23.52■■□□□ 1.36
USP54Q70EL1 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP54Q70EL1 PTCHD3P3-201ENST00000403073 906 ntBASIC23.52■■□□□ 1.36
USP54Q70EL1 LBH-203ENST00000404397 543 ntTSL 4 BASIC23.52■■□□□ 1.36
USP54Q70EL1 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC23.52■■□□□ 1.36
USP54Q70EL1 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC23.52■■□□□ 1.36
USP54Q70EL1 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC23.52■■□□□ 1.36
USP54Q70EL1 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC23.52■■□□□ 1.36
USP54Q70EL1 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
USP54Q70EL1 AC097637.2-201ENST00000624096 1997 ntBASIC23.52■■□□□ 1.36
USP54Q70EL1 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP54Q70EL1 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC23.52■■□□□ 1.36
USP54Q70EL1 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP54Q70EL1 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP54Q70EL1 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
USP54Q70EL1 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
USP54Q70EL1 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP54Q70EL1 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP54Q70EL1 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC23.51■■□□□ 1.35
USP54Q70EL1 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
USP54Q70EL1 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
USP54Q70EL1 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC23.51■■□□□ 1.35
USP54Q70EL1 CYB561-216ENST00000582297 897 ntTSL 3 BASIC23.51■■□□□ 1.35
USP54Q70EL1 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC23.51■■□□□ 1.35
USP54Q70EL1 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
USP54Q70EL1 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP54Q70EL1 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
USP54Q70EL1 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP54Q70EL1 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
USP54Q70EL1 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP54Q70EL1 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP54Q70EL1 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC23.51■■□□□ 1.35
USP54Q70EL1 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP54Q70EL1 CYMP-203ENST00000474680 1263 ntBASIC23.51■■□□□ 1.35
USP54Q70EL1 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC23.51■■□□□ 1.35
USP54Q70EL1 AL031432.2-201ENST00000566714 459 ntBASIC23.51■■□□□ 1.35
USP54Q70EL1 AL928711.1-201ENST00000570165 459 ntBASIC23.51■■□□□ 1.35
USP54Q70EL1 AC091812.2-201ENST00000619081 385 ntBASIC23.51■■□□□ 1.35
USP54Q70EL1 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP54Q70EL1 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
USP54Q70EL1 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
USP54Q70EL1 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC23.5■■□□□ 1.35
USP54Q70EL1 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC23.5■■□□□ 1.35
USP54Q70EL1 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP54Q70EL1 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
USP54Q70EL1 CNN2P11-201ENST00000429351 262 ntBASIC23.5■■□□□ 1.35
USP54Q70EL1 AC096734.2-201ENST00000562054 433 ntBASIC23.5■■□□□ 1.35
USP54Q70EL1 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC23.5■■□□□ 1.35
USP54Q70EL1 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC23.5■■□□□ 1.35
USP54Q70EL1 AP000997.3-201ENST00000623333 2250 ntBASIC23.5■■□□□ 1.35
USP54Q70EL1 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC23.5■■□□□ 1.35
USP54Q70EL1 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP54Q70EL1 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
USP54Q70EL1 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC23.5■■□□□ 1.35
USP54Q70EL1 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC23.49■■□□□ 1.35
USP54Q70EL1 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP54Q70EL1 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP54Q70EL1 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP54Q70EL1 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC23.49■■□□□ 1.35
USP54Q70EL1 PNMT-202ENST00000394246 821 ntTSL 2 BASIC23.49■■□□□ 1.35
USP54Q70EL1 AC107918.2-201ENST00000530817 355 ntBASIC23.49■■□□□ 1.35
USP54Q70EL1 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC23.49■■□□□ 1.35
USP54Q70EL1 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC23.49■■□□□ 1.35
USP54Q70EL1 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC23.49■■□□□ 1.35
USP54Q70EL1 AC004877.2-201ENST00000623941 599 ntBASIC23.49■■□□□ 1.35
USP54Q70EL1 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
USP54Q70EL1 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
USP54Q70EL1 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP54Q70EL1 TNXA-203ENST00000507684 2038 ntBASIC23.49■■□□□ 1.35
USP54Q70EL1 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
USP54Q70EL1 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP54Q70EL1 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP54Q70EL1 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC23.49■■□□□ 1.35
USP54Q70EL1 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
USP54Q70EL1 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms