Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC21.13■□□□□ 0.97
CTR9Q6PD62 AC106795.1-205ENST00000512851 1056 ntBASIC21.13■□□□□ 0.97
CTR9Q6PD62 AP002469.2-201ENST00000531724 424 ntBASIC21.13■□□□□ 0.97
CTR9Q6PD62 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CTR9Q6PD62 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.13■□□□□ 0.97
CTR9Q6PD62 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CTR9Q6PD62 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
CTR9Q6PD62 TP73-AS1-207ENST00000624167 988 ntBASIC21.13■□□□□ 0.97
CTR9Q6PD62 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTR9Q6PD62 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.13■□□□□ 0.97
CTR9Q6PD62 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CTR9Q6PD62 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CTR9Q6PD62 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
CTR9Q6PD62 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTR9Q6PD62 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTR9Q6PD62 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC21.13■□□□□ 0.97
CTR9Q6PD62 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC21.13■□□□□ 0.97
CTR9Q6PD62 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTR9Q6PD62 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CTR9Q6PD62 KRT8P10-201ENST00000450021 1447 ntBASIC21.12■□□□□ 0.97
CTR9Q6PD62 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 AC135050.7-201ENST00000624508 2218 ntBASIC21.12■□□□□ 0.97
CTR9Q6PD62 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 AL354751.1-201ENST00000412768 1863 ntBASIC21.12■□□□□ 0.97
CTR9Q6PD62 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 CTNS-203ENST00000399306 803 ntTSL 3 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 ABCD1P5-201ENST00000445663 754 ntBASIC21.12■□□□□ 0.97
CTR9Q6PD62 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 CALM3-211ENST00000598871 561 ntTSL 4 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 AC138028.4-201ENST00000564984 1845 ntBASIC21.12■□□□□ 0.97
CTR9Q6PD62 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
CTR9Q6PD62 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTR9Q6PD62 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 AC009949.1-201ENST00000623048 1830 ntBASIC21.11■□□□□ 0.97
CTR9Q6PD62 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 COX5BP2-201ENST00000392354 334 ntBASIC21.11■□□□□ 0.97
CTR9Q6PD62 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 AC008608.2-201ENST00000606089 416 ntBASIC21.11■□□□□ 0.97
CTR9Q6PD62 AL355877.3-201ENST00000622820 899 ntBASIC21.11■□□□□ 0.97
CTR9Q6PD62 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 AP005117.1-201ENST00000584346 1413 ntBASIC21.11■□□□□ 0.97
CTR9Q6PD62 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 ADM-208ENST00000534464 1640 ntTSL 2 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CTR9Q6PD62 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CTR9Q6PD62 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC21.1■□□□□ 0.97
CTR9Q6PD62 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTR9Q6PD62 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms