Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 COPE-202ENST00000349893 948 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 AC091812.2-201ENST00000619081 385 ntBASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 AP000974.1-201ENST00000623909 2387 ntBASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 AL589182.2-201ENST00000619332 1049 ntBASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 AC004706.3-202ENST00000621574 984 ntBASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 TBC1D3P5-201ENST00000579401 1545 ntBASIC21.62■■□□□ 1.05
CCDC88AQ3V6T2 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 AL805961.1-202ENST00000641562 540 ntBASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
CCDC88AQ3V6T2 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 SPDYE21P-201ENST00000413323 827 ntBASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 VN2R19P-201ENST00000442399 1052 ntBASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 NMU-203ENST00000507338 658 ntTSL 3 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 CD9-202ENST00000382515 1229 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 PUDP-206ENST00000540122 825 ntTSL 2 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 CYB561-217ENST00000582997 877 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.6■■□□□ 1.05
CCDC88AQ3V6T2 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 AC009093.7-201ENST00000623853 1223 ntBASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 AC018445.3-201ENST00000624177 1945 ntBASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CCDC88AQ3V6T2 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 AL353593.2-201ENST00000602529 1483 ntBASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms