Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC12.65□□□□□ -0.38
COL7A1Q02388 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL7A1Q02388 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC12.65□□□□□ -0.38
COL7A1Q02388 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
COL7A1Q02388 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
COL7A1Q02388 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
COL7A1Q02388 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
COL7A1Q02388 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC12.65□□□□□ -0.39
COL7A1Q02388 INO80E-210ENST00000567705 880 ntTSL 3 BASIC12.65□□□□□ -0.39
COL7A1Q02388 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
COL7A1Q02388 AL359881.2-201ENST00000602973 570 ntBASIC12.65□□□□□ -0.39
COL7A1Q02388 AC023141.13-201ENST00000604991 943 ntBASIC12.65□□□□□ -0.39
COL7A1Q02388 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC12.65□□□□□ -0.39
COL7A1Q02388 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC12.65□□□□□ -0.39
COL7A1Q02388 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
COL7A1Q02388 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC12.64□□□□□ -0.39
COL7A1Q02388 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC12.64□□□□□ -0.39
COL7A1Q02388 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC12.64□□□□□ -0.39
COL7A1Q02388 TIMM8BP1-201ENST00000452384 211 ntBASIC12.64□□□□□ -0.39
COL7A1Q02388 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
COL7A1Q02388 SERBP1P5-201ENST00000510079 1181 ntBASIC12.64□□□□□ -0.39
COL7A1Q02388 AL596325.1-201ENST00000563991 1082 ntBASIC12.64□□□□□ -0.39
COL7A1Q02388 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC12.64□□□□□ -0.39
COL7A1Q02388 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC12.64□□□□□ -0.39
COL7A1Q02388 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC12.64□□□□□ -0.39
COL7A1Q02388 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC12.64□□□□□ -0.39
COL7A1Q02388 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC12.64□□□□□ -0.39
COL7A1Q02388 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC12.64□□□□□ -0.39
COL7A1Q02388 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 RPS15P9-201ENST00000494093 319 ntBASIC12.64□□□□□ -0.39
COL7A1Q02388 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC12.64□□□□□ -0.39
COL7A1Q02388 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC12.64□□□□□ -0.39
COL7A1Q02388 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL7A1Q02388 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
COL7A1Q02388 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
COL7A1Q02388 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC12.63□□□□□ -0.39
COL7A1Q02388 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC12.63□□□□□ -0.39
COL7A1Q02388 TUBB3P1-201ENST00000405796 1332 ntBASIC12.63□□□□□ -0.39
COL7A1Q02388 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
COL7A1Q02388 RPL30-202ENST00000396070 440 ntTSL 2 BASIC12.63□□□□□ -0.39
COL7A1Q02388 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
COL7A1Q02388 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC12.63□□□□□ -0.39
COL7A1Q02388 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC12.63□□□□□ -0.39
COL7A1Q02388 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
COL7A1Q02388 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
COL7A1Q02388 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
COL7A1Q02388 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
COL7A1Q02388 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC12.63□□□□□ -0.39
COL7A1Q02388 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
COL7A1Q02388 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC12.63□□□□□ -0.39
COL7A1Q02388 NABP1-203ENST00000409510 843 ntTSL 5 BASIC12.63□□□□□ -0.39
COL7A1Q02388 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC12.63□□□□□ -0.39
COL7A1Q02388 KLF2P3-201ENST00000451977 1087 ntBASIC12.63□□□□□ -0.39
COL7A1Q02388 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC12.63□□□□□ -0.39
COL7A1Q02388 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC12.63□□□□□ -0.39
COL7A1Q02388 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
COL7A1Q02388 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
COL7A1Q02388 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL7A1Q02388 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 AL020989.1-201ENST00000422979 469 ntBASIC12.62□□□□□ -0.39
COL7A1Q02388 COQ9-214ENST00000567933 882 ntTSL 3 BASIC12.62□□□□□ -0.39
COL7A1Q02388 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC12.62□□□□□ -0.39
COL7A1Q02388 AL132655.2-201ENST00000596276 594 ntBASIC12.62□□□□□ -0.39
COL7A1Q02388 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
COL7A1Q02388 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC12.62□□□□□ -0.39
COL7A1Q02388 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
COL7A1Q02388 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC12.62□□□□□ -0.39
COL7A1Q02388 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
COL7A1Q02388 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms