Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SRP54P61011 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SRP54P61011 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SRP54P61011 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.56■□□□□ 0.4
SRP54P61011 ABCD1P5-201ENST00000445663 754 ntBASIC17.56■□□□□ 0.4
SRP54P61011 FGFR3P6-201ENST00000457012 610 ntBASIC17.56■□□□□ 0.4
SRP54P61011 AF186996.4-201ENST00000467186 377 ntBASIC17.56■□□□□ 0.4
SRP54P61011 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.56■□□□□ 0.4
SRP54P61011 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.56■□□□□ 0.4
SRP54P61011 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
SRP54P61011 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.56■□□□□ 0.4
SRP54P61011 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.56■□□□□ 0.4
SRP54P61011 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.56■□□□□ 0.4
SRP54P61011 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SRP54P61011 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SRP54P61011 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
SRP54P61011 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.55■□□□□ 0.4
SRP54P61011 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRP54P61011 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.55■□□□□ 0.4
SRP54P61011 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRP54P61011 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.55■□□□□ 0.4
SRP54P61011 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SRP54P61011 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRP54P61011 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SRP54P61011 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SRP54P61011 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.55■□□□□ 0.4
SRP54P61011 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRP54P61011 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRP54P61011 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SRP54P61011 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.55■□□□□ 0.4
SRP54P61011 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.55■□□□□ 0.4
SRP54P61011 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.55■□□□□ 0.4
SRP54P61011 FAM220CP-201ENST00000395253 831 ntBASIC17.55■□□□□ 0.4
SRP54P61011 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.55■□□□□ 0.4
SRP54P61011 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SRP54P61011 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SRP54P61011 KRT18P67-201ENST00000432816 1264 ntBASIC17.55■□□□□ 0.4
SRP54P61011 AC007967.3-201ENST00000434308 558 ntBASIC17.55■□□□□ 0.4
SRP54P61011 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.55■□□□□ 0.4
SRP54P61011 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.55■□□□□ 0.4
SRP54P61011 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.55■□□□□ 0.4
SRP54P61011 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SRP54P61011 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
SRP54P61011 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.55■□□□□ 0.4
SRP54P61011 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.55■□□□□ 0.4
SRP54P61011 AL773604.1-201ENST00000617417 272 ntBASIC17.55■□□□□ 0.4
SRP54P61011 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.55■□□□□ 0.4
SRP54P61011 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.55■□□□□ 0.4
SRP54P61011 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.55■□□□□ 0.4
SRP54P61011 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SRP54P61011 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.55■□□□□ 0.4
SRP54P61011 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SRP54P61011 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SRP54P61011 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRP54P61011 AL096828.2-201ENST00000567259 1965 ntBASIC17.55■□□□□ 0.4
SRP54P61011 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRP54P61011 AP005117.1-201ENST00000584346 1413 ntBASIC17.55■□□□□ 0.4
SRP54P61011 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRP54P61011 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SRP54P61011 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.54■□□□□ 0.4
SRP54P61011 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.54■□□□□ 0.4
SRP54P61011 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.54■□□□□ 0.4
SRP54P61011 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
SRP54P61011 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.54■□□□□ 0.4
SRP54P61011 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.54■□□□□ 0.4
SRP54P61011 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.54■□□□□ 0.4
SRP54P61011 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.54■□□□□ 0.4
SRP54P61011 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
SRP54P61011 AP000347.1-202ENST00000435868 847 ntBASIC17.54■□□□□ 0.4
SRP54P61011 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.54■□□□□ 0.4
SRP54P61011 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SRP54P61011 SCARNA2-201ENST00000458748 420 ntBASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms