Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIM2P55344 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIM2P55344 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIM2P55344 BCL2-203ENST00000589955 5011 ntBASIC16.92■□□□□ 0.3
LIM2P55344 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
LIM2P55344 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.92■□□□□ 0.3
LIM2P55344 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIM2P55344 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.92■□□□□ 0.3
LIM2P55344 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIM2P55344 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.91■□□□□ 0.3
LIM2P55344 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LIM2P55344 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.91■□□□□ 0.3
LIM2P55344 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.91■□□□□ 0.3
LIM2P55344 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LIM2P55344 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.91■□□□□ 0.3
LIM2P55344 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LIM2P55344 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.91■□□□□ 0.3
LIM2P55344 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.91■□□□□ 0.3
LIM2P55344 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.91■□□□□ 0.3
LIM2P55344 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.91■□□□□ 0.3
LIM2P55344 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.91■□□□□ 0.3
LIM2P55344 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.91■□□□□ 0.3
LIM2P55344 AC011840.4-201ENST00000578471 627 ntBASIC16.91■□□□□ 0.3
LIM2P55344 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.91■□□□□ 0.3
LIM2P55344 AL353801.3-201ENST00000609898 542 ntBASIC16.91■□□□□ 0.3
LIM2P55344 NPAP1P7-201ENST00000613027 823 ntBASIC16.91■□□□□ 0.3
LIM2P55344 AC093458.2-201ENST00000623150 629 ntBASIC16.91■□□□□ 0.3
LIM2P55344 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.91■□□□□ 0.3
LIM2P55344 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 AC138932.1-201ENST00000534164 6830 ntBASIC16.91■□□□□ 0.3
LIM2P55344 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LIM2P55344 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIM2P55344 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
LIM2P55344 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.9■□□□□ 0.3
LIM2P55344 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.9■□□□□ 0.3
LIM2P55344 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.9■□□□□ 0.3
LIM2P55344 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.9■□□□□ 0.3
LIM2P55344 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LIM2P55344 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
LIM2P55344 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 ATP5G2P1-201ENST00000433580 426 ntBASIC16.9■□□□□ 0.3
LIM2P55344 DRAXINP1-201ENST00000437611 948 ntBASIC16.9■□□□□ 0.3
LIM2P55344 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.9■□□□□ 0.3
LIM2P55344 TPSP2-201ENST00000561760 610 ntBASIC16.9■□□□□ 0.3
LIM2P55344 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
LIM2P55344 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 MIR3180-1-201ENST00000580374 94 ntBASIC16.9■□□□□ 0.3
LIM2P55344 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.9■□□□□ 0.3
LIM2P55344 MIR3180-3-201ENST00000584616 94 ntBASIC16.9■□□□□ 0.3
LIM2P55344 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.9■□□□□ 0.3
LIM2P55344 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
LIM2P55344 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LIM2P55344 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
LIM2P55344 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIM2P55344 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.89■□□□□ 0.3
LIM2P55344 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
LIM2P55344 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
LIM2P55344 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.89■□□□□ 0.3
LIM2P55344 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LIM2P55344 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIM2P55344 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIM2P55344 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.89■□□□□ 0.29
LIM2P55344 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIM2P55344 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIM2P55344 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIM2P55344 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIM2P55344 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms