Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.08■□□□□ 0.65
VCPP55072 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.08■□□□□ 0.65
VCPP55072 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VCPP55072 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.08■□□□□ 0.64
VCPP55072 AF186996.4-201ENST00000467186 377 ntBASIC19.08■□□□□ 0.64
VCPP55072 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VCPP55072 AC093909.1-201ENST00000504731 1122 ntBASIC19.08■□□□□ 0.64
VCPP55072 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.08■□□□□ 0.64
VCPP55072 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.08■□□□□ 0.64
VCPP55072 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VCPP55072 AC005332.3-201ENST00000589904 676 ntBASIC19.08■□□□□ 0.64
VCPP55072 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.08■□□□□ 0.64
VCPP55072 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.08■□□□□ 0.64
VCPP55072 AL049840.3-201ENST00000602669 611 ntBASIC19.08■□□□□ 0.64
VCPP55072 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.08■□□□□ 0.64
VCPP55072 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VCPP55072 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VCPP55072 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VCPP55072 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VCPP55072 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.08■□□□□ 0.64
VCPP55072 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.08■□□□□ 0.64
VCPP55072 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.08■□□□□ 0.64
VCPP55072 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
VCPP55072 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
VCPP55072 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VCPP55072 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.08■□□□□ 0.64
VCPP55072 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.07■□□□□ 0.64
VCPP55072 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
VCPP55072 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.07■□□□□ 0.64
VCPP55072 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.07■□□□□ 0.64
VCPP55072 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.07■□□□□ 0.64
VCPP55072 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.07■□□□□ 0.64
VCPP55072 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
VCPP55072 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.07■□□□□ 0.64
VCPP55072 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.07■□□□□ 0.64
VCPP55072 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 CFL1-212ENST00000531413 636 ntTSL 3 BASIC19.07■□□□□ 0.64
VCPP55072 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.07■□□□□ 0.64
VCPP55072 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
VCPP55072 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC19.07■□□□□ 0.64
VCPP55072 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.07■□□□□ 0.64
VCPP55072 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.07■□□□□ 0.64
VCPP55072 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.07■□□□□ 0.64
VCPP55072 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.07■□□□□ 0.64
VCPP55072 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.07■□□□□ 0.64
VCPP55072 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
VCPP55072 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VCPP55072 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
VCPP55072 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
VCPP55072 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.06■□□□□ 0.64
VCPP55072 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.06■□□□□ 0.64
VCPP55072 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 AC098831.1-202ENST00000438821 336 ntBASIC19.06■□□□□ 0.64
VCPP55072 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 AP001160.2-201ENST00000596071 487 ntBASIC19.06■□□□□ 0.64
VCPP55072 AL390719.2-201ENST00000606993 987 ntBASIC19.06■□□□□ 0.64
VCPP55072 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.06■□□□□ 0.64
VCPP55072 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.06■□□□□ 0.64
VCPP55072 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
VCPP55072 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VCPP55072 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.05■□□□□ 0.64
VCPP55072 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 NSUN5P1-202ENST00000421140 1535 ntBASIC19.05■□□□□ 0.64
VCPP55072 NSUN5P2-203ENST00000457352 1529 ntBASIC19.05■□□□□ 0.64
VCPP55072 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 AC138028.4-201ENST00000564984 1845 ntBASIC19.05■□□□□ 0.64
VCPP55072 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
VCPP55072 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VCPP55072 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.05■□□□□ 0.64
VCPP55072 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms