Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN9P43378 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
PTPN9P43378 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 AC007967.3-201ENST00000434308 558 ntBASIC18.51■□□□□ 0.55
PTPN9P43378 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.51■□□□□ 0.55
PTPN9P43378 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN9P43378 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.51■□□□□ 0.55
PTPN9P43378 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
PTPN9P43378 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.51■□□□□ 0.55
PTPN9P43378 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
PTPN9P43378 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.51■□□□□ 0.55
PTPN9P43378 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN9P43378 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN9P43378 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN9P43378 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 AC005332.8-201ENST00000622750 2735 ntBASIC18.51■□□□□ 0.55
PTPN9P43378 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.5■□□□□ 0.55
PTPN9P43378 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.5■□□□□ 0.55
PTPN9P43378 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.5■□□□□ 0.55
PTPN9P43378 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.5■□□□□ 0.55
PTPN9P43378 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.5■□□□□ 0.55
PTPN9P43378 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
PTPN9P43378 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.5■□□□□ 0.55
PTPN9P43378 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 TOB2P1-201ENST00000469761 992 ntBASIC18.5■□□□□ 0.55
PTPN9P43378 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.5■□□□□ 0.55
PTPN9P43378 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.5■□□□□ 0.55
PTPN9P43378 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.5■□□□□ 0.55
PTPN9P43378 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
PTPN9P43378 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.5■□□□□ 0.55
PTPN9P43378 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.5■□□□□ 0.55
PTPN9P43378 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN9P43378 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.49■□□□□ 0.55
PTPN9P43378 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.49■□□□□ 0.55
PTPN9P43378 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.49■□□□□ 0.55
PTPN9P43378 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
PTPN9P43378 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.49■□□□□ 0.55
PTPN9P43378 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
PTPN9P43378 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PTPN9P43378 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.49■□□□□ 0.55
PTPN9P43378 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.49■□□□□ 0.55
PTPN9P43378 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.49■□□□□ 0.55
PTPN9P43378 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.49■□□□□ 0.55
PTPN9P43378 Z69720.1-201ENST00000601483 472 ntBASIC18.49■□□□□ 0.55
PTPN9P43378 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.49■□□□□ 0.55
PTPN9P43378 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.49■□□□□ 0.55
PTPN9P43378 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PTPN9P43378 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.49■□□□□ 0.55
PTPN9P43378 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
PTPN9P43378 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
PTPN9P43378 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PTPN9P43378 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN9P43378 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN9P43378 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
PTPN9P43378 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN9P43378 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN9P43378 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
PTPN9P43378 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN9P43378 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
PTPN9P43378 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms