Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
RFX1P22670 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.42■□□□□ 0.7
RFX1P22670 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
RFX1P22670 AL732292.2-201ENST00000609649 430 ntBASIC19.42■□□□□ 0.7
RFX1P22670 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.42■□□□□ 0.7
RFX1P22670 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
RFX1P22670 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.42■□□□□ 0.7
RFX1P22670 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
RFX1P22670 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
RFX1P22670 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.42■□□□□ 0.7
RFX1P22670 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
RFX1P22670 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.41■□□□□ 0.7
RFX1P22670 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 CHCHD2P8-201ENST00000429873 447 ntBASIC19.41■□□□□ 0.7
RFX1P22670 LINC00265-3P-201ENST00000447588 903 ntBASIC19.41■□□□□ 0.7
RFX1P22670 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.41■□□□□ 0.7
RFX1P22670 MIR3180-1-201ENST00000580374 94 ntBASIC19.41■□□□□ 0.7
RFX1P22670 MIR3180-3-201ENST00000584616 94 ntBASIC19.41■□□□□ 0.7
RFX1P22670 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 AL136038.4-201ENST00000603606 1261 ntBASIC19.41■□□□□ 0.7
RFX1P22670 AL031008.1-201ENST00000619963 541 ntBASIC19.41■□□□□ 0.7
RFX1P22670 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.41■□□□□ 0.7
RFX1P22670 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.41■□□□□ 0.7
RFX1P22670 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.41■□□□□ 0.7
RFX1P22670 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.41■□□□□ 0.7
RFX1P22670 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RFX1P22670 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.4■□□□□ 0.7
RFX1P22670 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RFX1P22670 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
RFX1P22670 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RFX1P22670 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.4■□□□□ 0.7
RFX1P22670 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 KRT18P65-201ENST00000439811 1286 ntBASIC19.4■□□□□ 0.7
RFX1P22670 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.4■□□□□ 0.7
RFX1P22670 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.4■□□□□ 0.7
RFX1P22670 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
RFX1P22670 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.4■□□□□ 0.7
RFX1P22670 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RFX1P22670 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RFX1P22670 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.4■□□□□ 0.7
RFX1P22670 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.4■□□□□ 0.7
RFX1P22670 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.7
RFX1P22670 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
RFX1P22670 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RFX1P22670 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
RFX1P22670 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.39■□□□□ 0.7
RFX1P22670 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.39■□□□□ 0.69
RFX1P22670 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.39■□□□□ 0.69
RFX1P22670 AL391807.1-203ENST00000604392 2365 ntBASIC19.39■□□□□ 0.69
RFX1P22670 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX1P22670 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX1P22670 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RFX1P22670 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.39■□□□□ 0.69
RFX1P22670 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.39■□□□□ 0.69
RFX1P22670 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.39■□□□□ 0.69
RFX1P22670 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.39■□□□□ 0.69
RFX1P22670 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.39■□□□□ 0.69
RFX1P22670 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.39■□□□□ 0.69
RFX1P22670 AC004263.2-201ENST00000617183 678 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms