Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
PCNAP12004 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
PCNAP12004 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
PCNAP12004 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.39■□□□□ 0.37
PCNAP12004 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCNAP12004 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCNAP12004 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.39■□□□□ 0.37
PCNAP12004 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCNAP12004 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCNAP12004 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
PCNAP12004 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCNAP12004 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.39■□□□□ 0.37
PCNAP12004 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCNAP12004 AC132938.6-201ENST00000623828 1655 ntBASIC17.39■□□□□ 0.37
PCNAP12004 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PCNAP12004 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
PCNAP12004 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
PCNAP12004 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PCNAP12004 AC009053.2-201ENST00000563701 2365 ntBASIC17.38■□□□□ 0.37
PCNAP12004 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PCNAP12004 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.38■□□□□ 0.37
PCNAP12004 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
PCNAP12004 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
PCNAP12004 FAM8A6P-201ENST00000407496 1135 ntBASIC17.38■□□□□ 0.37
PCNAP12004 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.38■□□□□ 0.37
PCNAP12004 AC092597.1-201ENST00000487352 616 ntBASIC17.38■□□□□ 0.37
PCNAP12004 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.38■□□□□ 0.37
PCNAP12004 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.38■□□□□ 0.37
PCNAP12004 PCDHA12-202ENST00000613593 2588 ntBASIC17.38■□□□□ 0.37
PCNAP12004 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PCNAP12004 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
PCNAP12004 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PCNAP12004 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCNAP12004 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.38■□□□□ 0.37
PCNAP12004 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
PCNAP12004 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.37■□□□□ 0.37
PCNAP12004 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.37■□□□□ 0.37
PCNAP12004 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.37■□□□□ 0.37
PCNAP12004 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
PCNAP12004 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PCNAP12004 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.37■□□□□ 0.37
PCNAP12004 SLC25A6P5-201ENST00000435663 894 ntBASIC17.37■□□□□ 0.37
PCNAP12004 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.37■□□□□ 0.37
PCNAP12004 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.37■□□□□ 0.37
PCNAP12004 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.37■□□□□ 0.37
PCNAP12004 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PCNAP12004 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PCNAP12004 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.37■□□□□ 0.37
PCNAP12004 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCNAP12004 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PCNAP12004 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.37■□□□□ 0.37
PCNAP12004 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.37■□□□□ 0.37
PCNAP12004 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
PCNAP12004 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCNAP12004 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PCNAP12004 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCNAP12004 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCNAP12004 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.36■□□□□ 0.37
PCNAP12004 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
PCNAP12004 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.36■□□□□ 0.37
PCNAP12004 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCNAP12004 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
PCNAP12004 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCNAP12004 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms