Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.26■□□□□ 0.35
CLDN9O95484 HBZP1-201ENST00000354915 429 ntBASIC17.26■□□□□ 0.35
CLDN9O95484 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.26■□□□□ 0.35
CLDN9O95484 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CLDN9O95484 DDX43P3-201ENST00000441064 443 ntBASIC17.26■□□□□ 0.35
CLDN9O95484 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 KRT18P38-201ENST00000449496 1282 ntBASIC17.26■□□□□ 0.35
CLDN9O95484 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.26■□□□□ 0.35
CLDN9O95484 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.26■□□□□ 0.35
CLDN9O95484 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
CLDN9O95484 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.26■□□□□ 0.35
CLDN9O95484 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CLDN9O95484 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CLDN9O95484 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
CLDN9O95484 AC020916.1-201ENST00000587762 1774 ntBASIC17.25■□□□□ 0.35
CLDN9O95484 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.25■□□□□ 0.35
CLDN9O95484 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.25■□□□□ 0.35
CLDN9O95484 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
CLDN9O95484 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.25■□□□□ 0.35
CLDN9O95484 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.25■□□□□ 0.35
CLDN9O95484 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.25■□□□□ 0.35
CLDN9O95484 AC112907.2-201ENST00000448639 330 ntBASIC17.25■□□□□ 0.35
CLDN9O95484 AC092647.4-201ENST00000457211 535 ntBASIC17.25■□□□□ 0.35
CLDN9O95484 AL359075.1-203ENST00000462729 1002 ntBASIC17.25■□□□□ 0.35
CLDN9O95484 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.25■□□□□ 0.35
CLDN9O95484 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.25■□□□□ 0.35
CLDN9O95484 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
CLDN9O95484 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.25■□□□□ 0.35
CLDN9O95484 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.25■□□□□ 0.35
CLDN9O95484 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.25■□□□□ 0.35
CLDN9O95484 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CLDN9O95484 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
CLDN9O95484 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 AL353692.3-201ENST00000407031 1396 ntBASIC17.25■□□□□ 0.35
CLDN9O95484 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CLDN9O95484 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.25■□□□□ 0.35
CLDN9O95484 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLDN9O95484 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CLDN9O95484 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CLDN9O95484 LINC00304-203ENST00000565008 1864 ntBASIC17.24■□□□□ 0.35
CLDN9O95484 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.24■□□□□ 0.35
CLDN9O95484 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CLDN9O95484 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 PP12613-201ENST00000424958 2230 ntBASIC17.24■□□□□ 0.35
CLDN9O95484 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.24■□□□□ 0.35
CLDN9O95484 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.24■□□□□ 0.35
CLDN9O95484 AC112698.1-201ENST00000510299 916 ntBASIC17.24■□□□□ 0.35
CLDN9O95484 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.24■□□□□ 0.35
CLDN9O95484 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.24■□□□□ 0.35
CLDN9O95484 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.24■□□□□ 0.35
CLDN9O95484 GPR32P1-201ENST00000601788 811 ntBASIC17.24■□□□□ 0.35
CLDN9O95484 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.24■□□□□ 0.35
CLDN9O95484 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CLDN9O95484 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 HLA-J-201ENST00000462773 1622 ntBASIC17.24■□□□□ 0.35
CLDN9O95484 AC139713.2-201ENST00000641328 2723 ntBASIC17.24■□□□□ 0.35
CLDN9O95484 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.24■□□□□ 0.35
CLDN9O95484 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms