Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP1O15259 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP1O15259 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC22.4■■□□□ 1.18
NPHP1O15259 AC097374.2-201ENST00000618617 1306 ntBASIC22.4■■□□□ 1.18
NPHP1O15259 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
NPHP1O15259 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC22.4■■□□□ 1.18
NPHP1O15259 AC009947.1-201ENST00000444350 727 ntBASIC22.4■■□□□ 1.18
NPHP1O15259 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC22.4■■□□□ 1.18
NPHP1O15259 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC22.4■■□□□ 1.18
NPHP1O15259 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC22.4■■□□□ 1.18
NPHP1O15259 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC22.4■■□□□ 1.18
NPHP1O15259 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC22.4■■□□□ 1.18
NPHP1O15259 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC22.4■■□□□ 1.18
NPHP1O15259 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC22.4■■□□□ 1.18
NPHP1O15259 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC22.4■■□□□ 1.18
NPHP1O15259 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP1O15259 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP1O15259 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP1O15259 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC22.4■■□□□ 1.18
NPHP1O15259 PTGES2-AS1-201ENST00000443493 2100 ntBASIC22.4■■□□□ 1.18
NPHP1O15259 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC22.4■■□□□ 1.18
NPHP1O15259 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
NPHP1O15259 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC22.4■■□□□ 1.18
NPHP1O15259 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
NPHP1O15259 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC22.39■■□□□ 1.18
NPHP1O15259 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
NPHP1O15259 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
NPHP1O15259 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
NPHP1O15259 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
NPHP1O15259 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC22.39■■□□□ 1.18
NPHP1O15259 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
NPHP1O15259 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
NPHP1O15259 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.18
NPHP1O15259 GMCL1P1-201ENST00000463439 1581 ntBASIC22.39■■□□□ 1.18
NPHP1O15259 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
NPHP1O15259 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC22.39■■□□□ 1.17
NPHP1O15259 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
NPHP1O15259 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
NPHP1O15259 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC22.39■■□□□ 1.17
NPHP1O15259 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
NPHP1O15259 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC22.39■■□□□ 1.17
NPHP1O15259 HMGN1P19-201ENST00000436976 333 ntBASIC22.39■■□□□ 1.17
NPHP1O15259 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC22.39■■□□□ 1.17
NPHP1O15259 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
NPHP1O15259 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC22.39■■□□□ 1.17
NPHP1O15259 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC22.39■■□□□ 1.17
NPHP1O15259 AC027796.2-201ENST00000575326 344 ntBASIC22.39■■□□□ 1.17
NPHP1O15259 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC22.39■■□□□ 1.17
NPHP1O15259 AC006557.2-201ENST00000592985 1240 ntBASIC22.39■■□□□ 1.17
NPHP1O15259 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
NPHP1O15259 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
NPHP1O15259 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
NPHP1O15259 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
NPHP1O15259 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
NPHP1O15259 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
NPHP1O15259 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
NPHP1O15259 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
NPHP1O15259 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC22.39■■□□□ 1.17
NPHP1O15259 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC22.38■■□□□ 1.17
NPHP1O15259 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC22.38■■□□□ 1.17
NPHP1O15259 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC22.38■■□□□ 1.17
NPHP1O15259 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC22.38■■□□□ 1.17
NPHP1O15259 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
NPHP1O15259 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
NPHP1O15259 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
NPHP1O15259 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC22.38■■□□□ 1.17
NPHP1O15259 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC22.38■■□□□ 1.17
NPHP1O15259 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
NPHP1O15259 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC22.38■■□□□ 1.17
NPHP1O15259 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.17
NPHP1O15259 AC004832.2-201ENST00000426397 482 ntBASIC22.38■■□□□ 1.17
NPHP1O15259 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
NPHP1O15259 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC22.38■■□□□ 1.17
NPHP1O15259 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC22.38■■□□□ 1.17
NPHP1O15259 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
NPHP1O15259 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC22.38■■□□□ 1.17
NPHP1O15259 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
NPHP1O15259 MTDHP5-201ENST00000598980 586 ntBASIC22.38■■□□□ 1.17
NPHP1O15259 AC004817.3-201ENST00000602957 2129 ntBASIC22.38■■□□□ 1.17
NPHP1O15259 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
NPHP1O15259 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC22.38■■□□□ 1.17
NPHP1O15259 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
NPHP1O15259 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
NPHP1O15259 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
NPHP1O15259 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC22.38■■□□□ 1.17
NPHP1O15259 AC079776.2-201ENST00000641154 1609 ntBASIC22.38■■□□□ 1.17
NPHP1O15259 AC005332.7-201ENST00000614046 2005 ntBASIC22.38■■□□□ 1.17
NPHP1O15259 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
NPHP1O15259 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC22.38■■□□□ 1.17
NPHP1O15259 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
NPHP1O15259 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
NPHP1O15259 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC22.38■■□□□ 1.17
NPHP1O15259 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC22.37■■□□□ 1.17
NPHP1O15259 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC22.37■■□□□ 1.17
NPHP1O15259 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
NPHP1O15259 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms