Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SIX4Q9UIU6 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SIX4Q9UIU6 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SIX4Q9UIU6 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.06■□□□□ 0.64
SIX4Q9UIU6 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SIX4Q9UIU6 REXO1L11P-201ENST00000620964 1927 ntBASIC19.06■□□□□ 0.64
SIX4Q9UIU6 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 EMBP1-201ENST00000458200 901 ntBASIC19.05■□□□□ 0.64
SIX4Q9UIU6 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 RN7SL510P-201ENST00000581311 263 ntBASIC19.05■□□□□ 0.64
SIX4Q9UIU6 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 REXO1L6P-202ENST00000619970 1078 ntBASIC19.05■□□□□ 0.64
SIX4Q9UIU6 AL691432.3-201ENST00000621860 400 ntBASIC19.05■□□□□ 0.64
SIX4Q9UIU6 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 SIRPAP1-201ENST00000448467 1770 ntBASIC19.05■□□□□ 0.64
SIX4Q9UIU6 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 AC018470.1-201ENST00000624790 3129 ntBASIC19.05■□□□□ 0.64
SIX4Q9UIU6 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX4Q9UIU6 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 AL121894.2-201ENST00000602977 491 ntBASIC19.04■□□□□ 0.64
SIX4Q9UIU6 AP001269.4-201ENST00000609611 512 ntBASIC19.04■□□□□ 0.64
SIX4Q9UIU6 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 BX276092.7-203ENST00000637198 1536 ntBASIC19.04■□□□□ 0.64
SIX4Q9UIU6 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.04■□□□□ 0.64
SIX4Q9UIU6 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 AC019129.2-201ENST00000609837 1235 ntBASIC19.03■□□□□ 0.64
SIX4Q9UIU6 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX4Q9UIU6 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms